Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_I06
         (1268 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    32   0.15 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   5.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   9.6  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 20/55 (36%), Positives = 20/55 (36%)
 Frame = +2

Query: 320 GXGXXGXGXGGXGGXXIRNXXGRGRXGGGGGXXXXSHXXXXRGGGXGXTKQXXEP 484
           G G  G G GG  G       G GR G GG           RGG  G  K   EP
Sbjct: 24  GRGGFGGGRGGARGGGRGGARG-GRGGRGGARGGRGGSSGGRGGAKGGAKVIIEP 77



 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/45 (37%), Positives = 17/45 (37%)
 Frame = +2

Query: 326 GXXGXGXGGXGGXXIRNXXGRGRXGGGGGXXXXSHXXXXRGGGXG 460
           G  G   GG GG       GRG  GGG G          RGG  G
Sbjct: 9   GGRGGSRGGRGGFN----GGRGGFGGGRGGARGGGRGGARGGRGG 49


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.0 bits (47), Expect(2) = 5.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 359 PPXPPPPXP 333
           PP PPPP P
Sbjct: 775 PPPPPPPPP 783



 Score = 22.2 bits (45), Expect(2) = 5.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 371 GXPXPPXPPP 342
           G P PP PPP
Sbjct: 759 GGPPPPPPPP 768


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 17/47 (36%), Positives = 17/47 (36%)
 Frame = +2

Query: 320 GXGXXGXGXGGXGGXXIRNXXGRGRXGGGGGXXXXSHXXXXRGGGXG 460
           G G  G G GG  G       G G  G GGG           GGG G
Sbjct: 222 GHGGFGGGPGGFEGGP--GGFGGGPGGFGGGLGGFGGGPGGFGGGPG 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.308    0.138    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,471,137
Number of Sequences: 5004
Number of extensions: 14766
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 689550766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)