Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_I05
         (1217 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.07 |||substrate-specific nuclear cofactor for exosome a...    38   0.004
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    29   1.3  
SPAC22E12.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       28   2.3  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   5.3  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    26   9.2  

>SPCC1739.07 |||substrate-specific nuclear cofactor for exosome
           activity |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 133

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
 Frame = +3

Query: 183 DKDFVNNVENLKENLIEVQQVLDKLLPLKKNYDKMSLPAQIELDLFFV---YTLNSLHWI 353
           D ++    E L + L  V+ VL  L   +  ++     +++E    ++   Y +NS  + 
Sbjct: 2   DPEYSELFERLNKQLDNVEDVLKPLKDAESIFELAEGKSELEQAKLYITMSYAINSTLYS 61

Query: 354 HLRTKGIDPTKHPIKDELLRIKATMLKWQEVKDRQKRPTVNVEVAKRLV 500
             +  GID ++ P+  EL R+K  + K Q+ +      T  V  +   +
Sbjct: 62  FYKLNGIDASERPVMQELQRVKNYISKIQQAEKNVNPKTEAVNTSNAAI 110


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 979 RLFRYFINTVPIIVSHNCGYLTLYYKTD-SELMWQGGCFEL 860
           RLF +FI++ P+ V + C  + L  +T   EL+W     +L
Sbjct: 211 RLFDFFISSHPLTVVYTCAQVVLDNRTSIIELLWDNSGADL 251


>SPAC22E12.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 96

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = -2

Query: 463 LFWRSFTSCHFNIVAFILSSSSLMGCFVGSMPFVRKCIQCSEFKVYTKNK 314
           +F+RS    HF   AF+++ ++ +  F+   PF +    C  +K+ T+++
Sbjct: 25  MFYRSSRILHFE-EAFVINETNNINQFIPKQPFFKLLDCCILYKLQTEDR 73


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -3

Query: 903 KQTQNSCGKVDALSSSNHLNPY*VMSSSSYL 811
           + T+     V ALSSS+HL P    SSSS L
Sbjct: 221 ESTEKPLLSVSALSSSSHLQPTSATSSSSRL 251


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +3

Query: 156 DFKYGELAKDKDFVNNVENLKENLIEVQQVLDKLLPLKKNYDKMSLPAQIELDLFFVYTL 335
           DF    L K +D +    +   N  E+    +     +K+Y+K S     +LD FF Y +
Sbjct: 150 DFYIKNLEKTEDLIRTDSHFVLNK-ELLSFRNDYEHRRKHYEKYSQCLNKQLDHFFSYKV 208

Query: 336 NSLH 347
            ++H
Sbjct: 209 TTVH 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,935,098
Number of Sequences: 5004
Number of extensions: 73794
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 659412242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)