Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_I05
         (1217 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1022 + 10323158-10323393,10323486-10323531,10325887-103259...    36   0.064
12_02_0269 - 16617292-16618852,16622763-16623562                       29   9.8  

>08_01_1022 +
           10323158-10323393,10323486-10323531,10325887-10325941,
           10326027-10326107,10326189-10326400
          Length = 209

 Score = 35.9 bits (79), Expect = 0.064
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +3

Query: 360 RTKGIDPTKHPIKDELLRIKATMLKWQEVKDRQKRP-----TVNVEVAKRLVRNGL 512
           R  G+DP +HPIK E  R+     K    +D  K P     TVN + A R + + L
Sbjct: 79  RCSGVDPDEHPIKKEFERLSLWEEKLNRFEDWDKAPLRPTTTVNTQAAARFIGHSL 134


>12_02_0269 - 16617292-16618852,16622763-16623562
          Length = 786

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +3

Query: 153 WDFKYGELAKDKDFVNNVENLKENLIEVQQVLDKLLPLKK-NYDKMSLPAQIELDLFFV 326
           +D K  + + + DF NN+ +LKE L  +  +L KL  ++  N  K  L  ++    +FV
Sbjct: 23  YDLKEIQFSTEFDFKNNIWHLKEELSCMNALLQKLPNMEALNIQKRELRNKVRELAYFV 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,638,459
Number of Sequences: 37544
Number of extensions: 395635
Number of successful extensions: 720
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3736328292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)