Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_I02
         (1181 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    28   2.9  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    27   3.8  
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    26   8.9  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   8.9  

>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 23/73 (31%), Positives = 38/73 (52%)
 Frame = +1

Query: 742 TDVEAARPNEDSSEKVKIVSVKGPNLDANVTKALQEQVKEFERAMKEAQRRDQGIVNDEG 921
           ++ EA R    SS + K + +K      N   +LQEQ  EF+R +KE +        ++ 
Sbjct: 463 SESEAERKRLFSSAQEKQLQMKET---VNKLTSLQEQNNEFDRQLKEQE--------EDL 511

Query: 922 SNEIEELTDVKDL 960
            N+ EELT+++ L
Sbjct: 512 QNKEEELTELRKL 524


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +1

Query: 793 IVSVKGPNLDANVTKALQEQVKEFERAMKEAQRRDQGIVNDEGSNEIE 936
           + S+KGP L A + K +Q  V+       + +  D+ + +D+G++  +
Sbjct: 226 VPSIKGPVLHAIIDKIIQIDVEIQVEVDDDDEEEDEVVTDDDGTSNAD 273


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 853 VKEFERAMKEAQRRDQGIVNDEGSNEIEELTDVKD 957
           VK+   A KEA  R + + ND+G  +   L  + D
Sbjct: 55  VKKARSAFKEAVSRSKNLTNDQGYEKYLWLAQIND 89


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = -1

Query: 884  ASFIARSNSFTCS*SAFVTFASKLGPFTLTILTFSLESSLGLAASTS 744
            +S ++  +S+  S SAF + +S+      ++ + SL SS+G+ +S S
Sbjct: 3625 SSVLSELSSYDLSTSAFSSSSSEPSTLDYSVSSSSLSSSIGVGSSFS 3671


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,715,078
Number of Sequences: 5004
Number of extensions: 40675
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 635506058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)