Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_H23
(1151 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q7ZUG0 Cluster: Small nuclear ribonucleoprotein E; n=18... 153 6e-36
UniRef50_P62304 Cluster: Small nuclear ribonucleoprotein E; n=51... 153 8e-36
UniRef50_Q4MZX3 Cluster: Small nuclear ribonucleoprotein, putati... 105 2e-21
UniRef50_Q4PB34 Cluster: Putative uncharacterized protein; n=3; ... 103 7e-21
UniRef50_A4VCU1 Cluster: Small nuclear ribonucleoprotein E, puta... 102 2e-20
UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1; ... 99 2e-19
UniRef50_A3FQK4 Cluster: Small nuclear ribonucleoprotein, putati... 97 6e-19
UniRef50_A1CDT1 Cluster: Small nuclear ribonucleoprotein SmE, pu... 92 2e-17
UniRef50_Q12330 Cluster: Small nuclear ribonucleoprotein E; n=3;... 92 2e-17
UniRef50_UPI00004984BB Cluster: small nuclear ribonucleoprotein;... 91 5e-17
UniRef50_A0C1J5 Cluster: Chromosome undetermined scaffold_142, w... 89 2e-16
UniRef50_Q9U7L5 Cluster: SmE protein; n=3; Trypanosomatidae|Rep:... 77 9e-13
UniRef50_Q4Q7I2 Cluster: Small nuclear ribonucleoprotein polypep... 71 6e-11
UniRef50_A2X0E3 Cluster: Putative uncharacterized protein; n=2; ... 69 2e-10
UniRef50_A2EQ40 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 63 1e-08
UniRef50_Q3LWL6 Cluster: MRNA splicing protein; n=1; Bigelowiell... 62 2e-08
UniRef50_Q9AVY1 Cluster: Putative small nuclear ribonucleoprotei... 57 7e-07
UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 48 5e-04
UniRef50_Q677D4 Cluster: Small nuclear ribonucleoprotein polypep... 45 0.003
UniRef50_Q4N5C8 Cluster: Small nuclear ribonucleoprotein B, puta... 45 0.004
UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4; T... 44 0.007
UniRef50_UPI00015B4C2B Cluster: PREDICTED: similar to ENSANGP000... 44 0.010
UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)... 44 0.010
UniRef50_Q74ZR8 Cluster: AGR130Wp; n=2; Saccharomycetales|Rep: A... 43 0.013
UniRef50_Q8IL38 Cluster: Small nuclear ribonuclear protein, puta... 43 0.017
UniRef50_Q8SSF1 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN E; n=1;... 42 0.023
UniRef50_A2R8P2 Cluster: Function: snRPG of H. sapiens is associ... 42 0.023
UniRef50_A7DRH4 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 42 0.040
UniRef50_A2DQD7 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 41 0.052
UniRef50_Q0UX37 Cluster: Predicted protein; n=1; Phaeosphaeria n... 41 0.069
UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3; M... 41 0.069
UniRef50_O29885 Cluster: SnRNP, putative; n=1; Archaeoglobus ful... 40 0.092
UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4; Th... 40 0.092
UniRef50_Q9N4G9 Cluster: Probable small nuclear ribonucleoprotei... 40 0.092
UniRef50_Q9VXE0 Cluster: Probable small nuclear ribonucleoprotei... 40 0.16
UniRef50_Q0WMZ9 Cluster: Sm-like protein; n=19; Eukaryota|Rep: S... 39 0.21
UniRef50_Q8TQX4 Cluster: Sm protein; n=8; Archaea|Rep: Sm protei... 39 0.21
UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm... 39 0.21
UniRef50_UPI000049841B Cluster: small nuclear ribonucleoprotein ... 39 0.28
UniRef50_Q2URY1 Cluster: Predicted protein; n=1; Aspergillus ory... 39 0.28
UniRef50_Q8IB57 Cluster: Small nuclear ribonucleoprotein, putati... 38 0.37
UniRef50_A3FQF0 Cluster: Putative uncharacterized protein; n=2; ... 38 0.37
UniRef50_P62308 Cluster: Small nuclear ribonucleoprotein G; n=46... 38 0.37
UniRef50_Q54HH8 Cluster: Putative small nuclear ribonucleopartic... 38 0.49
UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces cere... 38 0.49
UniRef50_A0RYZ2 Cluster: Small nuclear ribonucleoprotein; n=2; T... 38 0.49
UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1; Ae... 38 0.49
UniRef50_Q5K900 Cluster: U6 snRNA binding protein, putative; n=1... 38 0.65
UniRef50_A6R7U2 Cluster: Predicted protein; n=2; Eurotiomycetida... 38 0.65
UniRef50_Q54RX0 Cluster: LSM (Like-Sm) domain-containing protein... 37 0.85
UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm... 37 0.85
UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4; Eu... 37 0.85
UniRef50_Q4YVP4 Cluster: Ribonucleoprotein, putative; n=3; Plasm... 36 1.5
UniRef50_Q6CGF6 Cluster: Similar to tr|Q8IGS9 Drosophila melanog... 36 1.5
UniRef50_Q4UHZ4 Cluster: (U6) snRNA-associated Sm-like protein, ... 36 2.0
UniRef50_Q4PED8 Cluster: Putative uncharacterized protein; n=1; ... 36 2.0
UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm... 36 2.0
UniRef50_Q9L9N8 Cluster: ORF06; n=9; Borrelia burgdorferi group|... 36 2.6
UniRef50_A5K5F8 Cluster: U6 snRNA-associated Sm-like protein LSm... 36 2.6
UniRef50_Q8ILU8 Cluster: Ribonucleoprotein, putative; n=2; Plasm... 35 4.6
UniRef50_Q247T3 Cluster: Putative uncharacterized protein; n=1; ... 35 4.6
UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10; A... 35 4.6
UniRef50_O74966 Cluster: Probable small nuclear ribonucleoprotei... 35 4.6
UniRef50_Q00XA2 Cluster: Putative small nuclear ribonucleoprotei... 34 6.0
UniRef50_Q5CME6 Cluster: Similar to small nuclear ribonucleoprot... 34 6.0
UniRef50_A7ANM8 Cluster: Sm domain containing protein; n=1; Babe... 34 6.0
UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167, w... 34 6.0
UniRef50_Q8U0P4 Cluster: Putative snRNP Sm-like protein; n=11; E... 34 6.0
UniRef50_Q98S49 Cluster: Small nuclear ribonucleoprotein F; n=1;... 34 8.0
UniRef50_Q54F84 Cluster: Putative uncharacterized protein; n=1; ... 34 8.0
UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core, ... 34 8.0
UniRef50_Q59ZT4 Cluster: Potential RNA processing complex subuni... 34 8.0
UniRef50_Q0U170 Cluster: Putative uncharacterized protein; n=1; ... 34 8.0
UniRef50_Q8ZYP8 Cluster: Small nuclear ribonucleoprotein homolog... 34 8.0
UniRef50_A1RY58 Cluster: Like-Sm ribonucleoprotein, core; n=1; T... 34 8.0
>UniRef50_Q7ZUG0 Cluster: Small nuclear ribonucleoprotein E; n=18;
Eukaryota|Rep: Small nuclear ribonucleoprotein E - Danio
rerio (Zebrafish) (Brachydanio rerio)
Length = 92
Score = 153 bits (372), Expect = 6e-36
Identities = 70/88 (79%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +2
Query: 65 MAYKGP-PKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDE 241
MAY+G KVQKVMVQPINLIFRYLQNRSR+ +WLYE VN+RIEG I+GFDEYMN+VLD+
Sbjct: 1 MAYRGQGQKVQKVMVQPINLIFRYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDD 60
Query: 242 AEEVHMKSKNRKQIGRIMMKGDNITLIQ 325
AEEVHMK+KNRK +GRIM+KGDNITL+Q
Sbjct: 61 AEEVHMKTKNRKPLGRIMLKGDNITLLQ 88
>UniRef50_P62304 Cluster: Small nuclear ribonucleoprotein E; n=51;
Eukaryota|Rep: Small nuclear ribonucleoprotein E - Homo
sapiens (Human)
Length = 92
Score = 153 bits (371), Expect = 8e-36
Identities = 69/88 (78%), Positives = 82/88 (93%), Gaps = 1/88 (1%)
Frame = +2
Query: 65 MAYKGP-PKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDE 241
MAY+G KVQKVMVQPINLIFRYLQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VLD+
Sbjct: 1 MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD 60
Query: 242 AEEVHMKSKNRKQIGRIMMKGDNITLIQ 325
AEE+H K+K+RKQ+GRIM+KGDNITL+Q
Sbjct: 61 AEEIHSKTKSRKQLGRIMLKGDNITLLQ 88
>UniRef50_Q4MZX3 Cluster: Small nuclear ribonucleoprotein, putative;
n=2; Theileria|Rep: Small nuclear ribonucleoprotein,
putative - Theileria parva
Length = 91
Score = 105 bits (253), Expect = 2e-21
Identities = 47/79 (59%), Positives = 61/79 (77%)
Frame = +2
Query: 86 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 265
K+QK+M QPIN IFR+ +RVQIWL++ N +IEG I GFDEYMN+VLD A EVH+K
Sbjct: 7 KLQKIMTQPINQIFRFFTGGTRVQIWLFDQPNTKIEGTIRGFDEYMNMVLDNATEVHVKK 66
Query: 266 KNRKQIGRIMMKGDNITLI 322
+K +GRI++KGD +TLI
Sbjct: 67 NVKKDVGRILLKGDCMTLI 85
>UniRef50_Q4PB34 Cluster: Putative uncharacterized protein; n=3;
Dikarya|Rep: Putative uncharacterized protein - Ustilago
maydis (Smut fungus)
Length = 136
Score = 103 bits (248), Expect = 7e-21
Identities = 45/74 (60%), Positives = 62/74 (83%), Gaps = 1/74 (1%)
Frame = +2
Query: 95 KVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNR 274
KV VQPIN+IFR+LQ ++RV +WLY+NV+ RIEG I+GFDE+MN+ L +AEEV K N+
Sbjct: 6 KVSVQPINIIFRHLQQQTRVSLWLYDNVDFRIEGKIIGFDEFMNVTLADAEEVWTKKDNK 65
Query: 275 K-QIGRIMMKGDNI 313
+ ++GRI++KGDNI
Sbjct: 66 RVELGRILLKGDNI 79
>UniRef50_A4VCU1 Cluster: Small nuclear ribonucleoprotein E,
putative; n=1; Tetrahymena thermophila SB210|Rep: Small
nuclear ribonucleoprotein E, putative - Tetrahymena
thermophila SB210
Length = 140
Score = 102 bits (245), Expect = 2e-20
Identities = 43/80 (53%), Positives = 61/80 (76%)
Frame = +2
Query: 86 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 265
K K + P+ IF +LQ + RVQIWL+EN +++EG I+GFDEYMN+VLDE EV K+
Sbjct: 4 KQTKTITNPLTTIFGFLQKQVRVQIWLFENTEIKLEGKIIGFDEYMNMVLDETSEVDCKT 63
Query: 266 KNRKQIGRIMMKGDNITLIQ 325
+++IGRI++KG+NITLI+
Sbjct: 64 NQKREIGRILLKGENITLIR 83
>UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 111
Score = 99.1 bits (236), Expect = 2e-19
Identities = 45/79 (56%), Positives = 62/79 (78%)
Frame = +2
Query: 86 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 265
KVQ++M QPI ++R+QIWL+E +LRIEG I+GFDEYMN+VLD+AEE+++K
Sbjct: 5 KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKK 55
Query: 266 KNRKQIGRIMMKGDNITLI 322
RK +GRI++KGDNITL+
Sbjct: 56 DTRKSLGRILLKGDNITLM 74
>UniRef50_A3FQK4 Cluster: Small nuclear ribonucleoprotein, putative;
n=1; Cryptosporidium parvum Iowa II|Rep: Small nuclear
ribonucleoprotein, putative - Cryptosporidium parvum
Iowa II
Length = 92
Score = 97.5 bits (232), Expect = 6e-19
Identities = 44/81 (54%), Positives = 64/81 (79%), Gaps = 2/81 (2%)
Frame = +2
Query: 86 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 265
K QK+M+QPIN IF ++ RVQIWLY++ NL +EG I GFDEYMNIVLD+A EV+ K
Sbjct: 8 KTQKMMLQPINQIFHLFTSKQRVQIWLYDHKNLVLEGVIQGFDEYMNIVLDQASEVYTKK 67
Query: 266 KNRKQ--IGRIMMKGDNITLI 322
+ R++ +G+++++G+NI+LI
Sbjct: 68 EVRRETSVGQLLLRGENISLI 88
>UniRef50_A1CDT1 Cluster: Small nuclear ribonucleoprotein SmE,
putative; n=12; Pezizomycotina|Rep: Small nuclear
ribonucleoprotein SmE, putative - Aspergillus clavatus
Length = 95
Score = 92.3 bits (219), Expect = 2e-17
Identities = 43/87 (49%), Positives = 62/87 (71%), Gaps = 4/87 (4%)
Frame = +2
Query: 77 GPPKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVH 256
G +K ++ PI+ IF+ LQ R+ V IWLYE + RIEG I GFDE+MN+V+D+A EV
Sbjct: 6 GGGAARKTLLAPIHFIFKLLQQRTTVSIWLYEQLAFRIEGKIRGFDEFMNLVVDDAVEVR 65
Query: 257 MKSK----NRKQIGRIMMKGDNITLIQ 325
M +K R+ +G+I++KGDN++LIQ
Sbjct: 66 MATKTDEEKRRPLGQILLKGDNVSLIQ 92
>UniRef50_Q12330 Cluster: Small nuclear ribonucleoprotein E; n=3;
Saccharomycetaceae|Rep: Small nuclear ribonucleoprotein
E - Saccharomyces cerevisiae (Baker's yeast)
Length = 94
Score = 92.3 bits (219), Expect = 2e-17
Identities = 43/83 (51%), Positives = 61/83 (73%), Gaps = 7/83 (8%)
Frame = +2
Query: 95 KVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNR 274
K MV PIN IF +LQ ++ V IWL+E + +RI+G IVGFDE+MN+V+DEA E+ + S +
Sbjct: 8 KAMVPPINCIFNFLQQQTPVTIWLFEQIGIRIKGKIVGFDEFMNVVIDEAVEIPVNSADG 67
Query: 275 KQ-------IGRIMMKGDNITLI 322
K+ +G+I++KGDNITLI
Sbjct: 68 KEDVEKGTPLGKILLKGDNITLI 90
>UniRef50_UPI00004984BB Cluster: small nuclear ribonucleoprotein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein - Entamoeba histolytica HM-1:IMSS
Length = 89
Score = 91.1 bits (216), Expect = 5e-17
Identities = 37/79 (46%), Positives = 59/79 (74%)
Frame = +2
Query: 86 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 265
K+ K M+ P+ I +++ RV IWL+EN LRIEG + GFD+Y+N+VL + EEV++K+
Sbjct: 5 KMTKAMILPVKFIVNLAKHKQRVSIWLFENTALRIEGTLSGFDQYINLVLTDTEEVYLKT 64
Query: 266 KNRKQIGRIMMKGDNITLI 322
R++IG I++KG+NI++I
Sbjct: 65 NTRRKIGTILLKGENISVI 83
>UniRef50_A0C1J5 Cluster: Chromosome undetermined scaffold_142,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_142,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 95
Score = 89.4 bits (212), Expect = 2e-16
Identities = 37/80 (46%), Positives = 58/80 (72%)
Frame = +2
Query: 86 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 265
K QK + QP++ F +++++IWL EN NLRI+G + GFDEY+N+VLD A E K+
Sbjct: 9 KPQKKITQPLHAFFTLFTEKTQLEIWLVENDNLRIQGKLAGFDEYLNLVLDRAVEYDRKT 68
Query: 266 KNRKQIGRIMMKGDNITLIQ 325
K K++G+I++KG+NI L++
Sbjct: 69 KATKELGKILLKGENIVLVR 88
>UniRef50_Q9U7L5 Cluster: SmE protein; n=3; Trypanosomatidae|Rep:
SmE protein - Leptomonas collosoma
Length = 94
Score = 77.0 bits (181), Expect = 9e-13
Identities = 27/76 (35%), Positives = 57/76 (75%)
Frame = +2
Query: 95 KVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNR 274
K+MV+P ++I +++ + RV +WL + +++IEG+++G+DE+MN+VL +A E + K+K
Sbjct: 14 KLMVKPSSVIHKFMTTQQRVCVWLVHDAHIKIEGNLLGYDEFMNVVLGDATETNSKTKES 73
Query: 275 KQIGRIMMKGDNITLI 322
+G+I+++ DN+ ++
Sbjct: 74 THLGKILLRSDNVGVV 89
>UniRef50_Q4Q7I2 Cluster: Small nuclear ribonucleoprotein
polypeptide e, putative; n=4; Trypanosomatidae|Rep:
Small nuclear ribonucleoprotein polypeptide e, putative
- Leishmania major
Length = 86
Score = 70.9 bits (166), Expect = 6e-11
Identities = 24/74 (32%), Positives = 52/74 (70%)
Frame = +2
Query: 101 MVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQ 280
M P ++ R++Q+ RV +WL + +R+EG+++G+DE+MN+VL + E ++++ +
Sbjct: 8 MENPTGVVHRFMQDHQRVCVWLVHDPQIRLEGNLLGYDEFMNVVLGDTTETNLRNSKSYR 67
Query: 281 IGRIMMKGDNITLI 322
+G+I+++ DN+ +I
Sbjct: 68 LGKILLRSDNVGVI 81
>UniRef50_A2X0E3 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 141
Score = 69.3 bits (162), Expect = 2e-10
Identities = 29/49 (59%), Positives = 40/49 (81%)
Frame = +2
Query: 176 VNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 322
V++ + H GFDEYMN+VLDEAEE+++K RK +GRI++KGDNITL+
Sbjct: 88 VSVTLHVHAKGFDEYMNLVLDEAEEINIKKDTRKSLGRILLKGDNITLM 136
Score = 66.1 bits (154), Expect = 2e-09
Identities = 30/50 (60%), Positives = 41/50 (82%)
Frame = +2
Query: 86 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVL 235
KVQ++M QPINLIFR+LQ+++R+QIWL+E +LRIEG I+ Y+N VL
Sbjct: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII---MYVNSVL 51
>UniRef50_A2EQ40 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 93
Score = 63.3 bits (147), Expect = 1e-08
Identities = 24/71 (33%), Positives = 49/71 (69%)
Frame = +2
Query: 110 PINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGR 289
P+ + YL+ R+R+++ L +N + +EG+++GFDEYMN+VL ++ EV+ K R +G
Sbjct: 15 PLKIYVSYLKERARLRVHLNDNSKMYMEGNLLGFDEYMNLVLGDSYEVYPKENTRVPLGT 74
Query: 290 IMMKGDNITLI 322
+++G+ + ++
Sbjct: 75 SLLRGECVGMV 85
>UniRef50_Q3LWL6 Cluster: MRNA splicing protein; n=1; Bigelowiella
natans|Rep: MRNA splicing protein - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 80
Score = 62.5 bits (145), Expect = 2e-08
Identities = 33/76 (43%), Positives = 51/76 (67%)
Frame = +2
Query: 89 VQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSK 268
++K+MV PINL++RYL ++ + + L E N I G I+GFDEYMNIVL EA + + +
Sbjct: 1 MKKLMVHPINLLYRYLIGKNIILVCLKEK-NKTINGKIIGFDEYMNIVLSEAVAKNKEVE 59
Query: 269 NRKQIGRIMMKGDNIT 316
K + I++KG+ I+
Sbjct: 60 KIKNL--ILVKGNQIS 73
>UniRef50_Q9AVY1 Cluster: Putative small nuclear ribonucleoprotein
E; n=1; Guillardia theta|Rep: Putative small nuclear
ribonucleoprotein E - Guillardia theta (Cryptomonas phi)
Length = 78
Score = 57.2 bits (132), Expect = 7e-07
Identities = 26/74 (35%), Positives = 49/74 (66%)
Frame = +2
Query: 101 MVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQ 280
M+QPIN +F++L+ ++ V I + + +EG+++GFDE+MN+V++ E S +
Sbjct: 1 MIQPINQLFKFLKEKNLVTIIFKGSNDYILEGNLIGFDEFMNLVIENTTE-KKDSLIVRD 59
Query: 281 IGRIMMKGDNITLI 322
+G +++KGD+I I
Sbjct: 60 LGYVLIKGDSILTI 73
>UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 78
Score = 48.0 bits (109), Expect = 5e-04
Identities = 19/48 (39%), Positives = 36/48 (75%)
Frame = +2
Query: 179 NLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 322
N I G+++GFD++MN++LD +EE+ + + K +G I+++GDN+ +I
Sbjct: 25 NKTIRGNLLGFDQHMNLLLDSSEEIPAEGE-AKGLGSIVVRGDNVVMI 71
>UniRef50_Q677D4 Cluster: Small nuclear ribonucleoprotein
polypeptide G; n=1; Hyacinthus orientalis|Rep: Small
nuclear ribonucleoprotein polypeptide G - Hyacinthus
orientalis (Common hyacinth)
Length = 96
Score = 45.2 bits (102), Expect = 0.003
Identities = 22/66 (33%), Positives = 42/66 (63%)
Frame = +2
Query: 128 RYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGD 307
+ + S++QI L N N + G + GFD++MN+V+D EV+ KN IG ++++G+
Sbjct: 26 KQVHGTSKLQIKL--NANRVVVGTLRGFDQFMNLVIDNTMEVNGNDKN--DIGMVVIRGN 81
Query: 308 NITLIQ 325
++ +I+
Sbjct: 82 SVVMIE 87
>UniRef50_Q4N5C8 Cluster: Small nuclear ribonucleoprotein B,
putative; n=3; Eukaryota|Rep: Small nuclear
ribonucleoprotein B, putative - Theileria parva
Length = 155
Score = 44.8 bits (101), Expect = 0.004
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 13/69 (18%)
Frame = +2
Query: 146 SRVQIWLYENV------NLRIEGHIVGFDEYMNIVLDEAEEVHM---KSKNRKQI----G 286
+R+Q WL NV N + G +V +D+YMN+VL + EE M K KNR ++ G
Sbjct: 6 TRMQHWLQYNVRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEFRMTLGKDKNRTEVKRTLG 65
Query: 287 RIMMKGDNI 313
++++G+NI
Sbjct: 66 FVLLRGENI 74
>UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4;
Thermoplasmatales|Rep: Small nuclear ribonucleoprotein -
Thermoplasma volcanium
Length = 71
Score = 44.0 bits (99), Expect = 0.007
Identities = 25/74 (33%), Positives = 47/74 (63%)
Frame = +2
Query: 101 MVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQ 280
M+ P+ L+ + R V + L +N L EG + G+D+YMN+VLD+ +E + ++ +RK
Sbjct: 1 MIMPMKLLEESVNKR--VSLLLKDNRVL--EGTLTGYDDYMNMVLDDVDE-NSENVSRK- 54
Query: 281 IGRIMMKGDNITLI 322
+G ++++G N+ I
Sbjct: 55 LGTVVIRGSNVVRI 68
>UniRef50_UPI00015B4C2B Cluster: PREDICTED: similar to
ENSANGP00000018479; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ENSANGP00000018479 - Nasonia
vitripennis
Length = 225
Score = 43.6 bits (98), Expect = 0.010
Identities = 20/86 (23%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Frame = +2
Query: 32 IPIHVSQYKQKMAYKGPPKVQKV--MVQPINLIFRYLQNRSRVQIWLYENVNLR--IEGH 199
+PI S +++ Y + ++ + P+ ++F+Y++NR RV+++ +R +E +
Sbjct: 87 VPIKTSNSERQQRYSEKNVLSRMPKALGPLGVLFQYMENRIRVKVYTRNANGIRGHVEAY 146
Query: 200 IVGFDEYMNIVLDEAEEVHMKSKNRK 277
+ FD + N+ L++ E+ + RK
Sbjct: 147 VAAFDRHWNLALEDCLELWTRKVKRK 172
>UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)
homolog; n=1; Methanopyrus kandleri|Rep: Small nuclear
ribonucleoprotein (SnRNP) homolog - Methanopyrus
kandleri
Length = 73
Score = 43.6 bits (98), Expect = 0.010
Identities = 18/45 (40%), Positives = 33/45 (73%)
Frame = +2
Query: 188 IEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 322
+ G +V FD ++N+VLD+ E+ S+ R +GR++++GD++TLI
Sbjct: 25 LRGRLVSFDGHLNLVLDDCVEIDEDSEVR--LGRVLIRGDSVTLI 67
>UniRef50_Q74ZR8 Cluster: AGR130Wp; n=2; Saccharomycetales|Rep:
AGR130Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 80
Score = 43.2 bits (97), Expect = 0.013
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +2
Query: 104 VQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKN-RKQ 280
V P+ +I R + IW+ N G +VGFD+++N+V+++ E + ++
Sbjct: 3 VLPLEIIDRAINQ----PIWVLLTSNREFTGTLVGFDDFVNVVIEDVVEYDAPDRAVKRH 58
Query: 281 IGRIMMKGDNITLI 322
GR+++ G+NIT++
Sbjct: 59 PGRMLLSGNNITVL 72
>UniRef50_Q8IL38 Cluster: Small nuclear ribonuclear protein,
putative; n=3; Plasmodium|Rep: Small nuclear ribonuclear
protein, putative - Plasmodium falciparum (isolate 3D7)
Length = 101
Score = 42.7 bits (96), Expect = 0.017
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Frame = +2
Query: 155 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRK--QIGRIMMKGDNITLI 322
+IW+ + I G +VGFDEY+N+VL++ E + +K +I ++++ G NIT++
Sbjct: 23 KIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTEYTYANNVKKVNKIKKLLLNGLNITIM 80
>UniRef50_Q8SSF1 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN E; n=1;
Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
RIBONUCLEOPROTEIN E - Encephalitozoon cuniculi
Length = 111
Score = 42.3 bits (95), Expect = 0.023
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = +2
Query: 104 VQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLD 238
V P+ I+ +L V+IW +++ + +G IVGFDEYMN+V+D
Sbjct: 46 VLPLEKIYDFLSRSIDVEIW-EKDMGAKHKGRIVGFDEYMNVVVD 89
>UniRef50_A2R8P2 Cluster: Function: snRPG of H. sapiens is
associated with small nuclear ribonucleoproteins; n=1;
Aspergillus niger|Rep: Function: snRPG of H. sapiens is
associated with small nuclear ribonucleoproteins -
Aspergillus niger
Length = 105
Score = 42.3 bits (95), Expect = 0.023
Identities = 24/81 (29%), Positives = 48/81 (59%)
Frame = +2
Query: 83 PKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMK 262
P+++K I + +Y++ R Q+ N N ++ G + G+D +MNIVLDEA E +
Sbjct: 6 PELKKSTEANIAVFQQYMEKRVFCQL----NGNRKVIGILRGYDVFMNIVLDEAFE-EKQ 60
Query: 263 SKNRKQIGRIMMKGDNITLIQ 325
+ IG I+++G+++ +++
Sbjct: 61 GGEKVAIGMIVIRGNSVVMLE 81
>UniRef50_A7DRH4 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 80
Score = 41.5 bits (93), Expect = 0.040
Identities = 23/76 (30%), Positives = 43/76 (56%)
Frame = +2
Query: 95 KVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNR 274
K+M I+ + ++ +V + N N ++G + FD +MN+ L+ AE+V + N
Sbjct: 2 KIMADEISTLMT--NSKDKVVLLRLRN-NKTVQGTLKDFDIHMNLTLENAEDVSEEKPN- 57
Query: 275 KQIGRIMMKGDNITLI 322
IG+++++GDNI I
Sbjct: 58 -PIGKVLLRGDNILAI 72
>UniRef50_A2DQD7 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 107
Score = 41.1 bits (92), Expect = 0.052
Identities = 17/50 (34%), Positives = 35/50 (70%), Gaps = 2/50 (4%)
Frame = +2
Query: 182 LRIEGHIVGFDEYMNIVLDEAEEVHMKSKNR--KQIGRIMMKGDNITLIQ 325
L +G ++ +DE+MN+VL + EE+ ++ R K+IG ++M+G N++ ++
Sbjct: 24 LSFQGILMNYDEHMNLVLRQVEEIPQDNQQREPKRIGLMVMRGCNVSTVE 73
>UniRef50_Q0UX37 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 80
Score = 40.7 bits (91), Expect = 0.069
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +2
Query: 155 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNI 313
QIW+ N G +VGFD+Y+N+VL+E E+ +++ ++ R + N+
Sbjct: 28 QIWVIMNGGKEFTGKLVGFDDYVNMVLEEVTEIWYQAETDRRFWRTSKETANM 80
>UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3;
Methanomicrobiales|Rep: Like-Sm ribonucleoprotein, core
- Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 80
Score = 40.7 bits (91), Expect = 0.069
Identities = 25/72 (34%), Positives = 44/72 (61%)
Frame = +2
Query: 107 QPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIG 286
+P++++ + L NR V I L I+G + G+D +MN+VLD+AEE+ + IG
Sbjct: 9 RPMDILDQVL-NRQPVLISL--KGGREIKGVLQGYDVHMNLVLDKAEEI--VQGQAQSIG 63
Query: 287 RIMMKGDNITLI 322
++++GDN+ I
Sbjct: 64 TLIIRGDNVIYI 75
>UniRef50_O29885 Cluster: SnRNP, putative; n=1; Archaeoglobus
fulgidus|Rep: SnRNP, putative - Archaeoglobus fulgidus
Length = 75
Score = 40.3 bits (90), Expect = 0.092
Identities = 25/75 (33%), Positives = 42/75 (56%)
Frame = +2
Query: 101 MVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQ 280
MV P ++ + RV++ EN ++ G + G D+YMN+ L A E + K R
Sbjct: 1 MVLPNQMVKSMVGKIIRVEMKGEEN---QLVGKLEGVDDYMNLYLTNAMECKGEEKVR-S 56
Query: 281 IGRIMMKGDNITLIQ 325
+G I+++G+N+ LIQ
Sbjct: 57 LGEIVLRGNNVVLIQ 71
>UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4;
Thermoplasmatales|Rep: Putative snRNP Sm-like protein -
Thermoplasma acidophilum
Length = 83
Score = 40.3 bits (90), Expect = 0.092
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +2
Query: 179 NLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 322
N G + G+D YMNIVL A E+ + +N+ R++++GDN+ +
Sbjct: 29 NREYSGILEGYDVYMNIVLQNASEI-INGENKGVYDRVLVRGDNVIFV 75
>UniRef50_Q9N4G9 Cluster: Probable small nuclear ribonucleoprotein
G; n=16; Bilateria|Rep: Probable small nuclear
ribonucleoprotein G - Caenorhabditis elegans
Length = 77
Score = 40.3 bits (90), Expect = 0.092
Identities = 17/51 (33%), Positives = 33/51 (64%)
Frame = +2
Query: 173 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 325
N N R+ G + GFD +MN+V+DEA E + K +G +++G+++ +++
Sbjct: 22 NGNRRVSGILRGFDPFMNMVIDEAVE-YQKDGGSVNLGMTVIRGNSVVIME 71
>UniRef50_Q9VXE0 Cluster: Probable small nuclear ribonucleoprotein
G; n=14; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein G - Drosophila melanogaster (Fruit
fly)
Length = 76
Score = 39.5 bits (88), Expect = 0.16
Identities = 18/66 (27%), Positives = 38/66 (57%)
Frame = +2
Query: 128 RYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGD 307
+Y+ R +++ N + G + GFD +MN+VLD+ E K + IG ++++G+
Sbjct: 11 KYMDKRMMLKL----NGGRAVTGILRGFDPFMNVVLDDTVE-ECKDNTKNNIGMVVIRGN 65
Query: 308 NITLIQ 325
+I +++
Sbjct: 66 SIVMVE 71
>UniRef50_Q0WMZ9 Cluster: Sm-like protein; n=19; Eukaryota|Rep:
Sm-like protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 88
Score = 39.1 bits (87), Expect = 0.21
Identities = 16/58 (27%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Frame = +2
Query: 155 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRK--QIGRIMMKGDNITLI 322
+IW+ + + G + GFD Y+N+VL++ E + ++ R+ ++ +I++ G+NI ++
Sbjct: 21 KIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAIL 78
>UniRef50_Q8TQX4 Cluster: Sm protein; n=8; Archaea|Rep: Sm protein -
Methanosarcina acetivorans
Length = 74
Score = 39.1 bits (87), Expect = 0.21
Identities = 18/59 (30%), Positives = 40/59 (67%)
Frame = +2
Query: 146 SRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 322
SR+++ + ++NL +EG + D+YMN+ L + E+ ++ + + +G ++++G+NI LI
Sbjct: 13 SRIRVEMKGDLNL-LEGTLKSVDDYMNLHLVDTMEI-VRGEKVRSLGSVVLRGNNIILI 69
>UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm5;
n=5; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
protein LSm5 - Saccharomyces cerevisiae (Baker's yeast)
Length = 93
Score = 39.1 bits (87), Expect = 0.21
Identities = 19/55 (34%), Positives = 36/55 (65%), Gaps = 7/55 (12%)
Frame = +2
Query: 179 NLRIEGHIVGFDEYMNIVLDEAEE----VHMKSKNRKQI---GRIMMKGDNITLI 322
N EG +VGFD+++N++L++A E +S+N K + GR+++ G+NI ++
Sbjct: 27 NREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRMLLSGNNIAIL 81
>UniRef50_UPI000049841B Cluster: small nuclear ribonucleoprotein G;
n=2; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein G - Entamoeba histolytica HM-1:IMSS
Length = 81
Score = 38.7 bits (86), Expect = 0.28
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +2
Query: 101 MVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRK- 277
M +P + YL+ R V+I + I G + G+DEYMN+VLDEA + ++
Sbjct: 1 MEKPKPELKHYLEKRILVKI----HGKRSIIGVLSGYDEYMNLVLDEAYDASNPDTDKHI 56
Query: 278 QIGRIMMKGDNITLIQ 325
IG IM+ G++I ++
Sbjct: 57 PIGMIMILGNSILSVE 72
>UniRef50_Q2URY1 Cluster: Predicted protein; n=1; Aspergillus
oryzae|Rep: Predicted protein - Aspergillus oryzae
Length = 122
Score = 38.7 bits (86), Expect = 0.28
Identities = 17/51 (33%), Positives = 34/51 (66%)
Frame = +2
Query: 173 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 325
N N ++ G + G+D +MNIVLDEA E + + IG ++++G+++ +++
Sbjct: 10 NGNRKVIGILRGYDVFMNIVLDEAFE-EKQGGEKVAIGMVVIRGNSVVMLE 59
>UniRef50_Q8IB57 Cluster: Small nuclear ribonucleoprotein, putative;
n=8; Eukaryota|Rep: Small nuclear ribonucleoprotein,
putative - Plasmodium falciparum (isolate 3D7)
Length = 83
Score = 38.3 bits (85), Expect = 0.37
Identities = 20/56 (35%), Positives = 37/56 (66%)
Frame = +2
Query: 149 RVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNIT 316
R+QI+L N N ++ G + G+D +MN+VLD E+ K + IG ++++G++I+
Sbjct: 21 RLQIYL--NGNRQVVGILRGYDTFMNLVLDNTMEI--KKDEQIDIGVVVIRGNSIS 72
>UniRef50_A3FQF0 Cluster: Putative uncharacterized protein; n=2;
Cryptosporidium|Rep: Putative uncharacterized protein -
Cryptosporidium parvum Iowa II
Length = 67
Score = 38.3 bits (85), Expect = 0.37
Identities = 16/47 (34%), Positives = 32/47 (68%)
Frame = +2
Query: 182 LRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 322
+R +G +V FDEYMNI+L++ EE + + + +G++ ++ +N+ I
Sbjct: 1 MRYKGTLVSFDEYMNILLNDCEE-WIDNTKKGTLGKVFIRCNNVLYI 46
>UniRef50_P62308 Cluster: Small nuclear ribonucleoprotein G; n=46;
Eukaryota|Rep: Small nuclear ribonucleoprotein G - Homo
sapiens (Human)
Length = 76
Score = 38.3 bits (85), Expect = 0.37
Identities = 16/51 (31%), Positives = 33/51 (64%)
Frame = +2
Query: 173 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 325
N ++G + GFD +MN+V+DE E+ S + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>UniRef50_Q54HH8 Cluster: Putative small nuclear
ribonucleoparticle-associated protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative small nuclear
ribonucleoparticle-associated protein - Dictyostelium
discoideum AX4
Length = 257
Score = 37.9 bits (84), Expect = 0.49
Identities = 16/49 (32%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Frame = +2
Query: 110 PINLIFRYLQNRSRVQIWLYENVNLR--IEGHIVGFDEYMNIVLDEAEE 250
P++L+ R L+++S++++ + +R G+I+ FD++MNI+L + EE
Sbjct: 166 PLSLLKRALESKSKIKVMIRGTNCIRGYCRGYIIAFDKHMNIILRDVEE 214
>UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like; n=1; Debaryomyces
hansenii|Rep: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like - Debaryomyces hansenii
(Yeast) (Torulaspora hansenii)
Length = 93
Score = 37.9 bits (84), Expect = 0.49
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = +2
Query: 191 EGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 322
+G ++GFD+Y+N+VL+ EE + K I ++++ G + ++
Sbjct: 46 KGTLIGFDDYVNMVLENVEEFDNEGPKGKVIKKMLLNGSQVAML 89
>UniRef50_A0RYZ2 Cluster: Small nuclear ribonucleoprotein; n=2;
Thermoprotei|Rep: Small nuclear ribonucleoprotein -
Cenarchaeum symbiosum
Length = 106
Score = 37.9 bits (84), Expect = 0.49
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +2
Query: 191 EGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 325
+G + D YMN+++ +AEE H SK GR++++G+N+ I+
Sbjct: 58 KGKMENVDSYMNLIMTDAEEFH-DSKVVANYGRVIVRGNNVLFIR 101
>UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1;
Aeropyrum pernix|Rep: Putative snRNP Sm-like protein -
Aeropyrum pernix
Length = 77
Score = 37.9 bits (84), Expect = 0.49
Identities = 17/47 (36%), Positives = 33/47 (70%)
Frame = +2
Query: 182 LRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 322
LRI+G + +D+++NI+L +AEE+ S R +G +++GD++ +I
Sbjct: 29 LRIKGVLKTYDQHLNIILGDAEEIGETSIRR--LGLTLVRGDSVVVI 73
>UniRef50_Q5K900 Cluster: U6 snRNA binding protein, putative; n=1;
Filobasidiella neoformans|Rep: U6 snRNA binding protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 131
Score = 37.5 bits (83), Expect = 0.65
Identities = 13/43 (30%), Positives = 28/43 (65%)
Frame = +2
Query: 194 GHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 322
G + G+D+ MN+V+D+ E + + + +G ++++G NI L+
Sbjct: 49 GILKGYDQLMNLVMDDVVEEYEDGRPTRSLGLVVLRGPNIVLV 91
>UniRef50_A6R7U2 Cluster: Predicted protein; n=2;
Eurotiomycetidae|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 104
Score = 37.5 bits (83), Expect = 0.65
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +2
Query: 179 NLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 322
N G ++GFD+Y+N+VL++ E K + +I++ G+NI ++
Sbjct: 46 NSEFSGTLLGFDDYVNMVLEDVTEFDYTGSQTK-LSKILLNGNNICML 92
>UniRef50_Q54RX0 Cluster: LSM (Like-Sm) domain-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: LSM (Like-Sm)
domain-containing protein - Dictyostelium discoideum AX4
Length = 85
Score = 37.1 bits (82), Expect = 0.85
Identities = 17/51 (33%), Positives = 32/51 (62%)
Frame = +2
Query: 173 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 325
N N + G + GFD +MNI L + EV + + +IG ++++G++I L++
Sbjct: 24 NGNRTVHGILRGFDTFMNIALKDTVEV-VSPTEKYEIGMVIIRGNSILLME 73
>UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm;
n=1; Aeropyrum pernix|Rep: Putative small nucleolar RNP
protein Sm - Aeropyrum pernix
Length = 94
Score = 37.1 bits (82), Expect = 0.85
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +2
Query: 125 FRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEV-HMKSKNRKQIGRIMMK 301
F+YL+ QI++ G +V D MN++LD+A EV ++ +IGR+++K
Sbjct: 13 FKYLKEHLNSQIYVKLKDGSEYVGKLVATDTTMNLILDDAIEVADNGTRLVAKIGRVLIK 72
Query: 302 GDNITLI 322
G + I
Sbjct: 73 GSMVEFI 79
>UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Methanobacterium thermoautotrophicum
Length = 81
Score = 37.1 bits (82), Expect = 0.85
Identities = 17/43 (39%), Positives = 29/43 (67%)
Frame = +2
Query: 194 GHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 322
G + FD +MN+VL++AEE+ R+ +G ++++GDNI I
Sbjct: 38 GVLKSFDLHMNLVLNDAEELEDGEVTRR-LGTVLIRGDNIVYI 79
>UniRef50_Q4YVP4 Cluster: Ribonucleoprotein, putative; n=3;
Plasmodium (Vinckeia)|Rep: Ribonucleoprotein, putative -
Plasmodium berghei
Length = 194
Score = 36.3 bits (80), Expect = 1.5
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 13/68 (19%)
Frame = +2
Query: 149 RVQIWLYENVNLRIE------GHIVGFDEYMNIVLDEAEE---VHMKSKNRKQI----GR 289
R++ WL V + I G + +D +MNIVL +AEE V K N K+I G
Sbjct: 6 RLESWLQYRVRVTISDTRYYVGTFLSYDRHMNIVLVDAEEFRRVKNKENNFKEIKRVVGL 65
Query: 290 IMMKGDNI 313
I+++GDNI
Sbjct: 66 ILIRGDNI 73
>UniRef50_Q6CGF6 Cluster: Similar to tr|Q8IGS9 Drosophila
melanogaster RE35747p; n=1; Yarrowia lipolytica|Rep:
Similar to tr|Q8IGS9 Drosophila melanogaster RE35747p -
Yarrowia lipolytica (Candida lipolytica)
Length = 131
Score = 36.3 bits (80), Expect = 1.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 188 IEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 325
+ GH++ D +MN+ L E EE +N + ++G NI +Q
Sbjct: 27 LRGHLLKCDHWMNLTLKEVEEFSASGENTATVSEYYVRGSNIKALQ 72
>UniRef50_Q4UHZ4 Cluster: (U6) snRNA-associated Sm-like protein,
putative; n=3; Piroplasmida|Rep: (U6) snRNA-associated
Sm-like protein, putative - Theileria annulata
Length = 90
Score = 35.9 bits (79), Expect = 2.0
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +2
Query: 155 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRK--QIGRIMMKGDNITLI 322
+IW+ + I G + GFD+YMN+VL++ + + K ++ ++ G+N+ ++
Sbjct: 23 KIWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYSFSADGVKTTELNDALVNGNNVAML 80
>UniRef50_Q4PED8 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 134
Score = 35.9 bits (79), Expect = 2.0
Identities = 17/54 (31%), Positives = 37/54 (68%), Gaps = 7/54 (12%)
Frame = +2
Query: 185 RIEGHIVGFDEYMNIVLDEA-EEVHMKSKNRK------QIGRIMMKGDNITLIQ 325
+I+G + GFD ++N+V+DEA E+VH ++ N + G ++++G+++T ++
Sbjct: 73 KIQGTLRGFDMFLNLVVDEAIEQVHPEAGNPNVWQDGDRCGTVVVRGNSVTSLE 126
>UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm8;
n=23; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm8 - Homo sapiens (Human)
Length = 96
Score = 35.9 bits (79), Expect = 2.0
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Frame = +2
Query: 188 IEGHIVGFDEYMNIVLDEA-EEVHMKSKNRKQI--GRIMMKGDNITLI 322
I G + GFD+ +N++LDE+ E V S+ +Q+ G +++GDN+ +I
Sbjct: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVI 70
>UniRef50_Q9L9N8 Cluster: ORF06; n=9; Borrelia burgdorferi
group|Rep: ORF06 - Borrelia burgdorferi (Lyme disease
spirochete)
Length = 184
Score = 35.5 bits (78), Expect = 2.6
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +2
Query: 152 VQIWLYENVNLRIEGHIVGFDEYMN---IVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 322
V+ W+Y N+ + G + F + + E E++ + +KN IG + KGDN+ L+
Sbjct: 24 VKNWIYSNIFIIKIGTVKEFKHQTQEAIVTIPEFEDLEIHTKNISNIGLELSKGDNVLLL 83
Query: 323 Q 325
Q
Sbjct: 84 Q 84
>UniRef50_A5K5F8 Cluster: U6 snRNA-associated Sm-like protein LSm8,
putative; n=2; Plasmodium|Rep: U6 snRNA-associated
Sm-like protein LSm8, putative - Plasmodium vivax
Length = 95
Score = 35.5 bits (78), Expect = 2.6
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 131 YLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEA-EEVHMKSKNRKQIGRIMMKGD 307
YL+N +I + N + G + GFD+ NI+L E ++ +S + +G +++GD
Sbjct: 9 YLEN----EILVITNDSRIFTGKLKGFDQTTNIILGNCYERIYKESLEKISLGLYIIRGD 64
Query: 308 NITLI 322
+TLI
Sbjct: 65 TVTLI 69
>UniRef50_Q8ILU8 Cluster: Ribonucleoprotein, putative; n=2;
Plasmodium|Rep: Ribonucleoprotein, putative - Plasmodium
falciparum (isolate 3D7)
Length = 201
Score = 34.7 bits (76), Expect = 4.6
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 13/69 (18%)
Frame = +2
Query: 146 SRVQIWLYENVNLRIE------GHIVGFDEYMNIVLDEAEEVH-MKSKN------RKQIG 286
SR++ WL V + I G + +D +MNIVL +AEE +KS+ ++ +G
Sbjct: 5 SRLETWLQYRVRVTISDTRYFVGTFLSYDRHMNIVLVDAEEFRKVKSQENSLKEIKRVVG 64
Query: 287 RIMMKGDNI 313
I+++G+NI
Sbjct: 65 LILIRGENI 73
>UniRef50_Q247T3 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 1357
Score = 34.7 bits (76), Expect = 4.6
Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +2
Query: 152 VQIWLYENVNLR-IEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGD 307
+Q++ ENV L+ IE ++G D +N+ +D + + ++K+ + +I + +KGD
Sbjct: 461 IQVFQDENVQLQPIEDQVIGSDLQLNVSIDPSSQQYIKNASFIKIVNLPIKGD 513
>UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10;
Archaea|Rep: Putative snRNP Sm-like protein -
Archaeoglobus fulgidus
Length = 77
Score = 34.7 bits (76), Expect = 4.6
Identities = 15/43 (34%), Positives = 28/43 (65%)
Frame = +2
Query: 194 GHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 322
G + G+D +MN+VL +AEE+ RK +G ++++GD + +
Sbjct: 29 GTLDGYDIHMNLVLLDAEEIQNGEVVRK-VGSVVIRGDTVVFV 70
>UniRef50_O74966 Cluster: Probable small nuclear ribonucleoprotein
G; n=7; Ascomycota|Rep: Probable small nuclear
ribonucleoprotein G - Schizosaccharomyces pombe (Fission
yeast)
Length = 77
Score = 34.7 bits (76), Expect = 4.6
Identities = 15/57 (26%), Positives = 38/57 (66%)
Frame = +2
Query: 155 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 325
Q+++ N + ++ G + G+D ++NIVL+++ E + + K IG + ++G+++ +I+
Sbjct: 16 QVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVK-IGSVAIRGNSVIMIE 71
>UniRef50_Q00XA2 Cluster: Putative small nuclear ribonucleoprotein
E; n=1; Ostreococcus tauri|Rep: Putative small nuclear
ribonucleoprotein E - Ostreococcus tauri
Length = 101
Score = 34.3 bits (75), Expect = 6.0
Identities = 15/66 (22%), Positives = 41/66 (62%)
Frame = +2
Query: 128 RYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGD 307
RY+ + R+++ N N + G + GFD+++N+VLD++ + + + +G ++++G+
Sbjct: 29 RYMDKKLRLRL----NGNRSVTGILRGFDQFLNLVLDDS--TNDTTTEKTPMGMVVVRGN 82
Query: 308 NITLIQ 325
++ ++
Sbjct: 83 SVVSME 88
>UniRef50_Q5CME6 Cluster: Similar to small nuclear
ribonucleoprotein; n=2; Cryptosporidium|Rep: Similar to
small nuclear ribonucleoprotein - Cryptosporidium
hominis
Length = 139
Score = 34.3 bits (75), Expect = 6.0
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Frame = +2
Query: 194 GHIVGFDEYMNIVLDEAEEVHMKSKN------RKQIGRIMMKGDNI 313
G+++ FD +MN+VL + +E K ++ +G IM++G+NI
Sbjct: 21 GNLMAFDRHMNLVLSDCQEYRRVKKGEEPKELKRSLGLIMLRGENI 66
>UniRef50_A7ANM8 Cluster: Sm domain containing protein; n=1; Babesia
bovis|Rep: Sm domain containing protein - Babesia bovis
Length = 159
Score = 34.3 bits (75), Expect = 6.0
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 15/71 (21%)
Frame = +2
Query: 146 SRVQIWLYENVNLRIE------GHIVGFDEYMNIVLDEAEEVHM---------KSKNRKQ 280
+R+Q WL V + I+ G + FD++MN+VL + EE + K + ++
Sbjct: 6 TRMQQWLQYRVRVAIKDGRKFVGTFIAFDKHMNLVLADCEEFRITKGKGPDKQKVELKRT 65
Query: 281 IGRIMMKGDNI 313
+G IM++G+NI
Sbjct: 66 LGFIMLRGENI 76
>UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167,
whole genome shotgun sequence; n=3;
Oligohymenophorea|Rep: Chromosome undetermined
scaffold_167, whole genome shotgun sequence - Paramecium
tetraurelia
Length = 138
Score = 34.3 bits (75), Expect = 6.0
Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 6/46 (13%)
Frame = +2
Query: 194 GHIVGFDEYMNIVLDEAEEVHMKS------KNRKQIGRIMMKGDNI 313
G + FD+++N++L E EE ++ + ++ +G I+++GDNI
Sbjct: 27 GTFLAFDKHLNVILSECEEYRIRKQGIHEIETKRTLGMIIVRGDNI 72
>UniRef50_Q8U0P4 Cluster: Putative snRNP Sm-like protein; n=11;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Pyrococcus furiosus
Length = 76
Score = 34.3 bits (75), Expect = 6.0
Identities = 15/43 (34%), Positives = 29/43 (67%)
Frame = +2
Query: 194 GHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 322
G ++G+D ++N+VL A E+ + K+ G+I+++GDN+ I
Sbjct: 29 GKLIGYDIHLNVVLANA-ELLQDGEVVKKYGKIVIRGDNVLAI 70
>UniRef50_Q98S49 Cluster: Small nuclear ribonucleoprotein F; n=1;
Guillardia theta|Rep: Small nuclear ribonucleoprotein F
- Guillardia theta (Cryptomonas phi)
Length = 73
Score = 33.9 bits (74), Expect = 8.0
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +2
Query: 194 GHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 322
G +G D YMNI+LD EV + +N +G ++++ +NI I
Sbjct: 27 GIFIGSDNYMNIILDSCSEV-ITEQNLGFLGLVLIRCNNILFI 68
>UniRef50_Q54F84 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 137
Score = 33.9 bits (74), Expect = 8.0
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 155 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRK--QIGRIMMKGDNITLIQ 325
QI + N I G I D Y+NI L +A+ + + KN++ + I+++ NI IQ
Sbjct: 42 QITIQLRSNCEIYGTITNVDAYLNIELSDAKLTNTRYKNKRDEHVQEILIQSRNIRFIQ 100
>UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core,
putative; n=2; Culicidae|Rep: Small nuclear
ribonucleoprotein, core, putative - Aedes aegypti
(Yellowfever mosquito)
Length = 162
Score = 33.9 bits (74), Expect = 8.0
Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Frame = +2
Query: 194 GHIVGFDEYMNIVLDEA-EEVHMKSKNRKQI--GRIMMKGDNITLI 322
G + GFD+ +NI+LDE+ E V+ + +Q+ G +++GDN+ +I
Sbjct: 91 GTLKGFDQTINIILDESHERVYSMNAGIEQVVLGLHIIRGDNVAVI 136
>UniRef50_Q59ZT4 Cluster: Potential RNA processing complex subunit
Lsm5; n=2; Saccharomycetales|Rep: Potential RNA
processing complex subunit Lsm5 - Candida albicans
(Yeast)
Length = 119
Score = 33.9 bits (74), Expect = 8.0
Identities = 22/73 (30%), Positives = 40/73 (54%)
Frame = +2
Query: 104 VQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQI 283
V P+ +I R + R RV + + N G ++GFD+Y+N+VL++ EV I
Sbjct: 52 VLPLEVIDRSVGKRVRVLMTGDKEFN----GKLIGFDDYVNMVLEDVTEV----DGGAPI 103
Query: 284 GRIMMKGDNITLI 322
++++ G +I +I
Sbjct: 104 KKMLLNGGHIAMI 116
>UniRef50_Q0U170 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 412
Score = 33.9 bits (74), Expect = 8.0
Identities = 23/96 (23%), Positives = 35/96 (36%)
Frame = +1
Query: 55 QTKNGL*RPTESSEGDGTAHQPYLPIPTEPESCANLAIRKREPED*RTHRGF**IHEYCS 234
Q K R E S G+ H+ LP+P E + ++ P D RG
Sbjct: 27 QRKKSRSRSREGSSGNAPPHKEPLPVP---EHRSERPMKSSRPRDASRERGVKEAPSAAG 83
Query: 235 RRS*RSPYEIEKQKTNRKNNDEGRQHNTHTEREPQR 342
R PY+ + + + D R H R+ +R
Sbjct: 84 RELSPEPYKKPRGSSRERRRDRSRDHTRDRSRDRRR 119
>UniRef50_Q8ZYP8 Cluster: Small nuclear ribonucleoprotein homolog;
n=4; Pyrobaculum|Rep: Small nuclear ribonucleoprotein
homolog - Pyrobaculum aerophilum
Length = 85
Score = 33.9 bits (74), Expect = 8.0
Identities = 12/45 (26%), Positives = 28/45 (62%)
Frame = +2
Query: 188 IEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 322
++G + +D MN+VL++A E+ + + + GRI+++G + +
Sbjct: 34 VKGVLTAYDGCMNLVLNDAAELDKSGEPKTRYGRIVIRGSQVIYV 78
>UniRef50_A1RY58 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Thermofilum pendens Hrk 5|Rep: Like-Sm
ribonucleoprotein, core - Thermofilum pendens (strain
Hrk 5)
Length = 100
Score = 33.9 bits (74), Expect = 8.0
Identities = 17/64 (26%), Positives = 35/64 (54%)
Frame = +2
Query: 131 YLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDN 310
+L+N+S +++ G + D MN+VLD+A+E+ +K Q+G + ++G N
Sbjct: 6 HLRNQSGKGVFVKLKDGSEYMGKLRMTDAAMNLVLDDAKELTETNKVVAQLGTVFIRGSN 65
Query: 311 ITLI 322
+ +
Sbjct: 66 LLFV 69
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 555,760,414
Number of Sequences: 1657284
Number of extensions: 9670280
Number of successful extensions: 30045
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 27630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29905
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 114252926083
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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