Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_H23
         (1151 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy...   104   3e-23
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces...    35   0.025
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch...    33   0.075
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    33   0.099
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    29   1.6  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    28   2.8  
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    27   3.7  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   6.5  

>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 84

 Score =  104 bits (249), Expect = 3e-23
 Identities = 46/80 (57%), Positives = 65/80 (81%)
 Frame = +2

Query: 86  KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 265
           +VQKVM+ PIN IF+ LQ  + V IWL+E  ++R++G I GFDE+MNIVLD+A +V  K+
Sbjct: 4   RVQKVMIPPINFIFKLLQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVDAKN 63

Query: 266 KNRKQIGRIMMKGDNITLIQ 325
            N++++GRI++KGDNITLIQ
Sbjct: 64  -NKRELGRILLKGDNITLIQ 82


>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 77

 Score = 34.7 bits (76), Expect = 0.025
 Identities = 15/57 (26%), Positives = 38/57 (66%)
 Frame = +2

Query: 155 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 325
           Q+++  N + ++ G + G+D ++NIVL+++ E  +  +  K IG + ++G+++ +I+
Sbjct: 16  QVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVK-IGSVAIRGNSVIMIE 71


>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
           Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 80

 Score = 33.1 bits (72), Expect = 0.075
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +2

Query: 158 IWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 322
           +W+         G +VGFD+Y+NIVL +  E    +   ++   +++ G+ + ++
Sbjct: 19  LWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCML 73


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 32.7 bits (71), Expect = 0.099
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 185 RIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKG 304
           +I G + GFD+ MN+VLD+ EE     ++ K  G I   G
Sbjct: 45  QITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLG 84


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 194 GHIVGFDEYMNIVLDEAEEV-HMKSKN 271
           G ++ FD +MN+VL + +E  H+K +N
Sbjct: 26  GQLLAFDGFMNLVLSDCQEYRHIKKQN 52


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 232 SRRS*RSPYEIEKQKTNRKNNDEGRQHNTHTEREPQRVSVKLGYKFAKSEV 384
           S++   S   ++KQ+T +  N +   + T  + EP+     L  +FAK+ V
Sbjct: 378 SKQDSPSTVPVDKQETAKPINKQVSSNETSAQEEPRESVAALRARFAKANV 428


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +2

Query: 188 IEGHIVGFDEYMNIVLDEAEEV 253
           + G +  +DE++N+VL +AEE+
Sbjct: 32  LNGRLHAYDEHLNMVLGDAEEI 53


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 23/69 (33%), Positives = 32/69 (46%)
 Frame = +1

Query: 136  TEPESCANLAIRKREPED*RTHRGF**IHEYCSRRS*RSPYEIEKQKTNRKNNDEGRQHN 315
            T PE     A+R R P +    R    + E  SR   R+P   + +    +NND  R  +
Sbjct: 1393 TTPEGNRR-ALRTRTPTNEDIQRSDSKLREDQSRD--RTP---QSRSFTNENNDNLRSVS 1446

Query: 316  THTEREPQR 342
             HT REPQ+
Sbjct: 1447 RHTRREPQQ 1455


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,931
Number of Sequences: 5004
Number of extensions: 41077
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 615584238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)