Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_H21
         (1214 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p...   128   2e-30
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    29   1.7  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   9.2  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    26   9.2  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   9.2  

>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 216

 Score =  128 bits (309), Expect = 2e-30
 Identities = 74/217 (34%), Positives = 121/217 (55%), Gaps = 1/217 (0%)
 Frame = +1

Query: 115 NIFLNKI-MSALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASALFSAASKTKALDI 291
           +IF   I ++A   +L +RSL+T+ ASA    PPVQ++GL+G YAS+L++AA K   LD 
Sbjct: 3   HIFRRSIPITARLPSLGIRSLATATASAH---PPVQLYGLDGSYASSLYTAAVKESKLDN 59

Query: 292 VEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENG 471
           VEK L +    ++   + +++I +P + R  K   +  +       P   N   +L +N 
Sbjct: 60  VEKALNKLSGVLQQRPEFEQYISSPWLTREDKKILVSSLTQMTGNEPLLKNFYNVLLDNH 119

Query: 472 RLGKLEAVINAFKIMMAAHRGEVACEVVTAKPLDQAQRQNLEAALKKFLKGNETVQLTAK 651
           RL  L  +   F  +M A RGE+  ++ +A PLD      LE+ + K   G   + ++ K
Sbjct: 120 RLYLLTRIQKQFSTLMRAKRGEIEVKITSATPLDSKILSRLESRIAKSKYGKGKLLVSNK 179

Query: 652 VDPSLIGGMVVSIGDKYVDMSVASKVKKYTELISAAV 762
           V PS+IGG++V IGD  +D+SV S++    +L+S  +
Sbjct: 180 VTPSIIGGLIVEIGDNILDVSVGSRLNNLNKLLSEPI 216


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 567 WFGCNNFTSYFTPVGSHHNLKSINDSLQFPQATI 466
           W G  +F + F  + +H  + S+N  L F QA I
Sbjct: 261 WLGPEHFLNEFFTLNTHQKVSSLNYHLAFQQARI 294


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 404  CFNASTFMLLFIVGLMMNSLSF-ASVLID 321
            C     F+LL   GL+MN L+F ASV+++
Sbjct: 1296 CITRVYFLLLKACGLIMNGLNFEASVMLE 1324


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 509 LKALMTASSFPKRPFSASNPSRLPVVG 429
           L   +T  + P++PFS S+P+  P +G
Sbjct: 233 LNQALTLINLPEQPFSISSPTATPQLG 259


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 470 PFSASNPSRLPVVGERLILLATCFNASTFML 378
           PFS    S+LPV G   ILL   F  +T+++
Sbjct: 3   PFSFDPSSKLPVTGIYNILLFNLFPLATYLV 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,556,398
Number of Sequences: 5004
Number of extensions: 72036
Number of successful extensions: 206
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 657420060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)