Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_H21
(1214 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0928 + 26024589-26024645,26024900-26024956,26025464-260257... 117 2e-26
02_05_0759 + 31545473-31546204 73 6e-13
07_03_1116 - 24084162-24084201,24084481-24084570,24084640-240852... 30 4.2
03_05_1054 + 29992101-29993032,29995378-29995401,29996790-29997423 30 4.2
08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,304... 29 5.6
03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499 29 9.8
03_02_0358 + 7784067-7784128,7784239-7785040,7785513-7785617,778... 29 9.8
>06_03_0928 +
26024589-26024645,26024900-26024956,26025464-26025707,
26026126-26026238,26026675-26026761,26026843-26026962
Length = 225
Score = 117 bits (282), Expect = 2e-26
Identities = 62/192 (32%), Positives = 106/192 (55%), Gaps = 2/192 (1%)
Frame = +1
Query: 166 RSLSTSVA--SAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKELCQFQQSIKTDA 339
R ++ VA + + +K P ++G G YASALF A+K LD VE E+ ++ K
Sbjct: 23 RGFASQVAKPTGKDIKVPEALYGGTGNYASALFLTAAKANLLDKVETEIRDVVEASKKSP 82
Query: 340 KLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLGKLEAVINAFKIMM 519
+FI + ++ + +V A+ + + S T N L +LA+NGRL ++ + F +
Sbjct: 83 LFSQFIKDLSVPKETRVKAITEIFAEAGFSDVTKNFLAVLADNGRLKHIDRIAERFVDLT 142
Query: 520 AAHRGEVACEVVTAKPLDQAQRQNLEAALKKFLKGNETVQLTAKVDPSLIGGMVVSIGDK 699
AH+GEV V T PL + + + L+ L+ L N+T+ + K+D S++GG+V+ G K
Sbjct: 143 MAHKGEVKVLVRTVIPLPEKEEKELKETLQDILGKNKTILIEQKIDYSIMGGLVIQFGQK 202
Query: 700 YVDMSVASKVKK 735
DMS+ ++ K+
Sbjct: 203 VFDMSIKTRAKQ 214
>02_05_0759 + 31545473-31546204
Length = 243
Score = 72.5 bits (170), Expect = 6e-13
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 5/172 (2%)
Frame = +1
Query: 241 YASALFSAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKI 420
YA+AL AS+ L+ +L + ++ +A + EF NPT+ R K + +A
Sbjct: 64 YATALSEVASENGTLEATVSDLEKLEKIFAEEA-IAEFFDNPTVPRDEKAQLIDEIAKSS 122
Query: 421 SLSPTTGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEVACEVVTAKPLDQAQRQNLEA 600
L N L ++ +NGR G + ++ F+ A EV T + Q + Q+L
Sbjct: 123 ELQAHVVNFLNVVVDNGRAGLMTQIVREFE---NAFNSLTGTEVATVTSVVQLESQDLAQ 179
Query: 601 ALKKF--LKGNETVQLTAKVDPSLIGGMVVSI---GDKYVDMSVASKVKKYT 741
++ L G + V++ ++DP LI G + G +DMSV ++++ T
Sbjct: 180 IAQQVQNLTGAKNVRVKTRIDPELIAGFTIQYGRDGSSLIDMSVRKQIEEIT 231
>07_03_1116 -
24084162-24084201,24084481-24084570,24084640-24085220,
24085653-24085822,24086006-24087074
Length = 649
Score = 29.9 bits (64), Expect = 4.2
Identities = 35/129 (27%), Positives = 50/129 (38%), Gaps = 6/129 (4%)
Frame = +1
Query: 229 LEGRYASALFSAASKTKALDIVEKELCQF--QQSIKTDAKLKEFIINPTIKRSMKVDALK 402
LE Y S A K KAL+ + E C+ ++ AK + F+ R V AL
Sbjct: 56 LEKSYKSKCDELAEKQKALEEKKAESCRLIAEKEANVSAKERAFLNQFQELRDTAVSALS 115
Query: 403 HVANKISLSPTTGNLLGLLAENG-RLGKLEAVINAFKIMMAAHRGEVAC---EVVTAKPL 570
V K + L G+L NG + K+ N + A+ A E A P+
Sbjct: 116 EVRQKYKV-----ELAGILDANGSKDKKVRTSTNDMNALCASEENTTASGLGEPSEASPV 170
Query: 571 DQAQRQNLE 597
D R L+
Sbjct: 171 DVKPRPVLK 179
>03_05_1054 + 29992101-29993032,29995378-29995401,29996790-29997423
Length = 529
Score = 29.9 bits (64), Expect = 4.2
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +1
Query: 550 VVTAKPLDQAQRQNLEAALKKFLKGNETVQLTAKVDPSLIGGMVVSIG---DKYVDMSVA 720
V +A LD Q + + +++ + G ++ + VDPSLI G VV G +D+SV
Sbjct: 449 VSSAVELDARQTELIARKMRR-ITGFASLTIENVVDPSLIAGFVVCYGPGESHVIDLSVK 507
Query: 721 SKV 729
K+
Sbjct: 508 GKL 510
>08_01_0344 +
3043824-3044123,3044260-3044314,3044810-3044985,
3045083-3045283,3045383-3045642,3045909-3046222,
3046399-3046622,3047046-3047398,3047709-3047826,
3047875-3048133,3048252-3049729
Length = 1245
Score = 29.5 bits (63), Expect = 5.6
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +1
Query: 568 LDQAQRQNLEAALKKFLKGNETVQLTAKVDPSLIGGMVVSIGDKYVDMSVASKVKKYTEL 747
L+ Q + + + K L G+ + ++ P L G +++IG Y D+ KV KY+ +
Sbjct: 659 LNSKQPKQEKDDIAKILLGSSSAAISGISKP-LFGYFIMTIGVAYYDLDAKRKVSKYSLI 717
Query: 748 ISAA 759
A
Sbjct: 718 FFTA 721
>03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499
Length = 454
Score = 28.7 bits (61), Expect = 9.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 524 AAIIILKALMTASSFPKRPFSASNPSRLPVVG 429
AA+ +L+ A++ +RP + P RLPV+G
Sbjct: 15 AAVALLQLAKVAATMRRRPRTPPGPWRLPVIG 46
>03_02_0358 +
7784067-7784128,7784239-7785040,7785513-7785617,
7785835-7786194
Length = 442
Score = 28.7 bits (61), Expect = 9.8
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Frame = +1
Query: 526 HRGEVACEVV-----TAKPLDQAQR-QNLEAALKKFLKGNETVQLTAKVDPSLIGGM 678
H G VA V T P+D A R + +E+ L+ L+G T DPS G +
Sbjct: 155 HGGRVAALVFVRDEETGAPIDDAARVRRIESRLRHVLRGGARCARTVLADPSAAGNL 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,576,866
Number of Sequences: 37544
Number of extensions: 466050
Number of successful extensions: 1092
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3724688640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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