Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_H13
         (1223 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...   122   1e-28
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...   115   2e-26
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   4.0  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   9.3  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    26   9.3  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
            L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score =  122 bits (293), Expect = 1e-28
 Identities = 62/106 (58%), Positives = 71/106 (66%)
 Frame = +2

Query: 686  VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 865
            V KA  AQ+ V KG H K  RK+R S  FRRPKT E  R PKY RKS+P  +R+D Y II
Sbjct: 3    VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKII 62

Query: 866  KFPLTSEAAMKKIEDNNTLVFIVHTSANKHXIKXXVXKLYDIXVVK 1003
              P+ SE+AMKKIED+NTLVF VH  ANK  IK  V KLY +  VK
Sbjct: 63   VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVK 108


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
            L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score =  115 bits (276), Expect = 2e-26
 Identities = 59/106 (55%), Positives = 69/106 (65%)
 Frame = +2

Query: 686  VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 865
            V KA  AQ+ V KG H K  +K+R S  FRRPKT +  R PKY RKS+    R+D Y II
Sbjct: 3    VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKII 62

Query: 866  KFPLTSEAAMKKIEDNNTLVFIVHTSANKHXIKXXVXKLYDIXVVK 1003
              P+ SE+AMKKIED+NTLVF VH  ANK  IK  V KLY +  VK
Sbjct: 63   VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVK 108


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = -2

Query: 850 IHAISLRQRLPWVFRVPR--RFKRLGSAEMHRVANFPYSLPMFTFYNLPLSLKCFSNRFH 677
           + A  +  R P   R P+  RF+ L S++   + + PY+ P   F     S +    + H
Sbjct: 196 LRASPVSSRTPSPTRFPKHARFQTLNSSDSASIYSSPYTSPTLEFSKKDASARSDILKMH 255

Query: 676 YFFLSLNPSL 647
               S  PSL
Sbjct: 256 RRTKSATPSL 265


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 586 SQNCQTQASSFQIEDCTEAQKDWD*GTKKS 675
           S+NCQ  +    +++C EA  D D G  K+
Sbjct: 479 SENCQKLSKQIPLDECNEALFDDDNGDYKA 508


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -2

Query: 955 VLVCTCMDNKDQGVVIFNLLHCCFRREREFNDVVGIHAISLRQ 827
           V++  C+D KD  + +     C  + + EF DV+  + +   Q
Sbjct: 788 VILLDCLDPKDPTIKLQKQKACLNKYKEEFADVIFFYLVDTEQ 830


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,898
Number of Sequences: 5004
Number of extensions: 39975
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 663396606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)