Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_H10
(1306 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.11
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 32 0.20
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.20
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.35
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.81
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 10.0
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.11
Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Frame = -1
Query: 670 KNPPXXPXXGFXPXLAPXXXNFXPGXPPXFGX--TPXPPXXXXKXXPPPQXPGXXXXXGG 497
K+PP P P AP P P G P PP PPP P GG
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Query: 496 XRXGXP 479
R P
Sbjct: 790 SRYYAP 795
Score = 32.7 bits (71), Expect = 0.11
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = -1
Query: 991 PXXXXPXXXXPPPGXXXGXFXPPPPXGGXXPPPXXKTPXXGXXKXPPPSP 842
P P P P PP P G PPP G PPP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/60 (31%), Positives = 19/60 (31%)
Frame = -2
Query: 582 LGKPXXPPXGXXXPXPPPKXXGPXXXXGGXGXGPQXXTPXPPXXXGFXXPXKPXXPPPXP 403
L P PP P P P P GP P PP G P PPP P
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPI-PVPPPAPIMGGP----PPPPPPPGVAGAGPPPPPPPPP 783
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Frame = -3
Query: 992 PXXXXXPXXXPPXXXXXGGFXXPPP---XXGXXPPPPXXNP 879
P P PP GG PPP G PPPP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.1 bits (57), Expect = 5.7
Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Frame = -2
Query: 591 PPXLGKPXXPPXGXXXPXPPPKXXG---PXXXXGGXGXGPQXXTPXPP 457
PP + P P P P P G P G G GP P PP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 31.9 bits (69), Expect = 0.20
Identities = 23/74 (31%), Positives = 25/74 (33%)
Frame = +3
Query: 894 GGGXXPPXGGGGXKXPXXXPGGGXXXXGXXXXGXPPXXKKXFXXXXXXXXGXXGFXXXGG 1073
GG PP G GG G G G G P + G GF G
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFE--GGPGGFGGGPGGFGGGLG 252
Query: 1074 XWGGGXKXFXGGGG 1115
+GGG F GG G
Sbjct: 253 GFGGGPGGFGGGPG 266
Score = 30.7 bits (66), Expect = 0.46
Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Frame = +3
Query: 921 GGGXKXPXXXPGGGXXXXGXXXXGXPPXXKKXF-XXXXXXXXGXXGFXXXGGXWGGGXKX 1097
GGG P PGG G G F G GF G +GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253
Query: 1098 FXGGGG 1115
F GG G
Sbjct: 254 FGGGPG 259
Score = 29.1 bits (62), Expect = 1.4
Identities = 23/65 (35%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Frame = +2
Query: 404 GXGGGXXGFXGX-KKPXXXGGXGVXFWGPXPXPPXXXXGPXXLGGG-XGFXXPXGGXWGX 577
G GG GF G GG G G P GP GGG GF GG G
Sbjct: 205 GGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264
Query: 578 PKXGG 592
P G
Sbjct: 265 PGGHG 269
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Frame = +2
Query: 410 GGGXXGFXGXKKPXXXGGXGVXFWGPXPXPPXXXXGPXXLGGG-XGFXXPXGGXWGXP 580
GGG GF G G G +G G GGG GF GG G P
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP 244
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.20
Identities = 16/56 (28%), Positives = 18/56 (32%)
Frame = -3
Query: 974 PXXXPPXXXXXGGFXXPPPXXGXXPPPPXXNPXPXXXKKXPPLPXGXKXXXFPXXP 807
P PP G PP PPPP P ++ PPL P P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/72 (27%), Positives = 20/72 (27%), Gaps = 1/72 (1%)
Frame = -3
Query: 1085 PPPXTPPXXKXXXXXXXXPXGXKXFFXPXGXPXXXXXPXXXPPXXXXXGGFXXPPPXXGX 906
PP TPP P P G P P P G PP
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSL--PMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPA 472
Query: 905 XP-PPPXXNPXP 873
P PPP P P
Sbjct: 473 APAPPPAPAPAP 484
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.1 bits (67), Expect = 0.35
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -2
Query: 483 PQXXTPXPPXXXGFXXPXKPXXPPPXPXKKK 391
P P PP GF P +P PPP KK
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKK 35
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 976 PXXXXPPPGXXXGXFXPPPPXGGXXPPPXXKTP 878
P PPPG PPPP G KTP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.81
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -3
Query: 926 PPPXXGXXPPPPXXNPXPXXXKKXPPLP 843
PPP PPPP P P PP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = -1
Query: 928 PPPPXGGXXPPPXXKTPXXGXXKXPPPSP 842
PPPP PP P PPP P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.2 bits (55), Expect = 10.0
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = -2
Query: 882 PXPXGLXKXPPPPPXXKGXXFPXXPXXGXKXAPXGXSRGETPXXXXSXXGXPP 724
P P K PPPP + P P AP + TP S PP
Sbjct: 734 PAPTPAVKHHPPPPPVRSSISPSMP-----PAPLTHANSSTPMNYVSQPESPP 781
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,134
Number of Sequences: 5004
Number of extensions: 35920
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 713396902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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