Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_H08
         (1239 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...   123   3e-28
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656...    33   0.61 
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116...    30   4.3  
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109...    29   5.7  
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395...    29   10.0 
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807...    29   10.0 

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score =  123 bits (296), Expect = 3e-28
 Identities = 71/174 (40%), Positives = 103/174 (59%), Gaps = 3/174 (1%)
 Frame = +2

Query: 116 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEG 286
           M +Y+D++TGDE+ SD++  + ++  +++EV G+ V +   D+ I G NPSAE    DEG
Sbjct: 1   MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEG 59

Query: 287 TDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMN 466
            D      VDIV   RL E   F DKK +  ++K Y+K L AKL+    ++ E FK N+ 
Sbjct: 60  VDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMKRYIKNLSAKLDA---EKQEEFKKNIE 115

Query: 467 KVMKDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEK 628
              K +LG+ K+LQFF GESM  DG +    Y+  DG   P  ++F HGL+E K
Sbjct: 116 GATKYLLGKLKDLQFFVGESMHDDGGLVFAYYK--DGATDPTFLYFSHGLKEVK 167


>01_05_0142 -
           18564697-18564792,18564824-18564928,18565606-18565678,
           18566262-18567637
          Length = 549

 Score = 32.7 bits (71), Expect = 0.61
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = -3

Query: 559 FHHGNHAITIHGLPSKEL----KFLKPAEDVFHYFVHVCFKYFNLVRRL 425
           FHH  H   ++  PSK+L    ++L+     FH F ++C++Y  + R+L
Sbjct: 245 FHHMLHLFQMYLKPSKKLVEGSQYLERGR-YFHSFANICYRYLKIGRKL 292


>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
            1164082-1164240,1164663-1164797,1165116-1165268,
            1165358-1165479,1165599-1166541,1166677-1166728,
            1166873-1167963,1168058-1168384,1168479-1168559,
            1168649-1168717,1168809-1168937,1169038-1169121,
            1169210-1169275
          Length = 1321

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +2

Query: 356  GDKKSYTL-YLKDYMKKLV-AKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESM 529
            G +K  TL  L++Y+  +V A L+    +Q+E FK  +NKV        K L+ F+ + M
Sbjct: 1140 GSEKMVTLDNLEEYVSSIVDATLKSGISNQIEAFKAGINKVF-----ALKTLRLFSEDEM 1194

Query: 530  D 532
            +
Sbjct: 1195 E 1195


>02_05_1057 +
           33809982-33810366,33810436-33810687,33810727-33810926,
           33811021-33811122
          Length = 312

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
 Frame = +2

Query: 152 MFSDTYKMKLVDEVI-YEVTGRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLN 328
           +FS       VDE I +E+    +    G+I ++GF         G D+AVE  ++ V  
Sbjct: 101 LFSGAETTDEVDEYIEFEINVGCIGGGGGNITVDGFRGGGSGGGRGGDAAVEIEINEV-- 158

Query: 329 HRLVETYAFGDKKS--YTLYLKD 391
            R+ E      K S  Y L L D
Sbjct: 159 -RVSEVRGIAGKASGTYVLVLLD 180


>10_01_0359 +
           3956527-3956616,3957623-3957818,3958102-3959418,
           3959482-3960445,3960588-3960648,3961500-3961946
          Length = 1024

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +2

Query: 329 HRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 508
           H L+   A  D  S +L  ++++   V   +E+A  Q+EV K  +    K+I     EL 
Sbjct: 177 HELIRAGAENDALSRSLEEREHLMMKVGGEKEQAESQIEVLKGTIQSGEKEISSLKYELH 236

Query: 509 FFTGE 523
             + E
Sbjct: 237 VLSKE 241


>04_01_0617 -
           8076624-8076971,8077761-8077883,8077965-8078035,
           8078108-8078360,8078613-8078768,8078854-8079770,
           8079858-8079927,8082310-8082416,8082722-8082755,
           8083621-8083940,8084031-8084820,8084890-8085046,
           8085647-8086068
          Length = 1255

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +2

Query: 221 TRAQGDIQIEGFNPSAEEADEGTDSAVESGVD--IVLNHRLVETYAFGD 361
           TR+   +Q++GF PSA ++ +G+ + V S  +  IV   +L +T   G+
Sbjct: 827 TRSSDKVQLKGFVPSAPKSSQGSRTYVSSAKNRFIVPKEQLQKTSTEGN 875


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,884,039
Number of Sequences: 37544
Number of extensions: 442954
Number of successful extensions: 966
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3817805856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)