Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_H06
(1203 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 267 2e-72
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 267 2e-72
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 48 3e-06
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 1.3
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 27 3.9
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 27 6.9
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 27 6.9
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 267 bits (654), Expect = 2e-72
Identities = 136/188 (72%), Positives = 156/188 (82%)
Frame = +3
Query: 201 IKLFGSWSCXAVQVSXXSLQASISVKAQYAKSLPHSAGRYAHKRFRKAQCPIVERLTNSL 380
IKLF + V+V SL I++ + LPH+AGR+ KRFRKA+C IVERLTNSL
Sbjct: 18 IKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSL 75
Query: 381 MMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRR 560
MM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+ GPREDSTRIG AGTVRR
Sbjct: 76 MMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRR 135
Query: 561 QAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDEL 740
QAVDVSPLRRVNQA+ L+ GAREAAFRN+K+I+EC+A+E+INAAKGSSNSYAIKKKDEL
Sbjct: 136 QAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDEL 195
Query: 741 ERVAKSNR 764
ERVAKSNR
Sbjct: 196 ERVAKSNR 203
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 267 bits (654), Expect = 2e-72
Identities = 136/188 (72%), Positives = 156/188 (82%)
Frame = +3
Query: 201 IKLFGSWSCXAVQVSXXSLQASISVKAQYAKSLPHSAGRYAHKRFRKAQCPIVERLTNSL 380
IKLF + V+V SL I++ + LPH+AGR+ KRFRKA+C IVERLTNSL
Sbjct: 18 IKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSL 75
Query: 381 MMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRR 560
MM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+ GPREDSTRIG AGTVRR
Sbjct: 76 MMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRR 135
Query: 561 QAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDEL 740
QAVDVSPLRRVNQA+ L+ GAREAAFRN+K+I+EC+A+E+INAAKGSSNSYAIKKKDEL
Sbjct: 136 QAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDEL 195
Query: 741 ERVAKSNR 764
ERVAKSNR
Sbjct: 196 ERVAKSNR 203
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 47.6 bits (108), Expect = 3e-06
Identities = 43/139 (30%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
Frame = +3
Query: 357 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 536
V+ L N +M +GKK A +IV A II TGENP+ VL AI P
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISPLMKLVSA 181
Query: 537 GRAGTVRRQAVDVSPLRRVNQAI-WLLCTGAREAAFRNIKTIAECVADELINAAKGSSNS 713
R + + +R A+ W+L E + K +++ + E+I +SN
Sbjct: 182 KRFNKSVEFPMPLKERQRRRIALQWIL----GECKSSSPKRLSDRIVKEIIAIRSKTSNC 237
Query: 714 YAIKKKDELERVAKSNR*N 770
+ KKKD L R+ NR N
Sbjct: 238 F--KKKDHLHRMCLVNRGN 254
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 416 GRTYCQTCV*NYSLVNWRKPSASTRDCHYQLWT 514
G TYC C L+NW K S S C +L+T
Sbjct: 101 GHTYCYEC-----LLNWLKESKSCPTCRQKLYT 128
>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 3.9
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 438 AFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRR 590
+ +I HL+TG N + T ++N R D R+ R+ + Q+ D SP +R
Sbjct: 159 SLDIHHLVTGHNADDIAETILMNL-LRGDVARLPRSTEITTQS-DSSPTKR 207
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 26.6 bits (56), Expect = 6.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 691 QLRVHLTPTPSKRRTSWSVLLNPTV 765
Q ++H P P +RR S + L NP++
Sbjct: 124 QQKIHRNPQPRRRRRSTTALPNPSL 148
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 508 LDPVKIRLGSVVRVQFVVKPLMFHPCAESTKQSGFCAQV 624
++PV R SVV V +P+ +H +S ++G Q+
Sbjct: 273 IEPVSSRQSSVVNNNSVQQPVAYHAFVQSPTENGTLPQL 311
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,995
Number of Sequences: 5004
Number of extensions: 54426
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 649451332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -