Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_H05
         (1230 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|...   184   3e-47
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|...   182   1e-46
SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...   118   2e-27
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    27   5.3  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    27   5.3  

>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score =  184 bits (447), Expect = 3e-47
 Identities = 88/103 (85%), Positives = 96/103 (93%)
 Frame = +3

Query: 198 RAGLQFPVGRIHRLLRNGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRII 377
           +AGL FPVGR+HRLLR GNYA+RVGAGAPVYLAAV+EYLAAE+LELAGNAARDNKKTRII
Sbjct: 22  KAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRII 81

Query: 378 PRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 506
           PRHLQLAIRNDEELNKLL  VTIAQGGV+PNI A LLPK++ K
Sbjct: 82  PRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQSGK 124


>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 132

 Score =  182 bits (442), Expect = 1e-46
 Identities = 87/99 (87%), Positives = 93/99 (93%)
 Frame = +3

Query: 198 RAGLQFPVGRIHRLLRNGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRII 377
           +AGL FPVGR+HRLLR GNYA+RVGAGAPVYLAAV+EYLAAE+LELAGNAARDNKKTRII
Sbjct: 22  KAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRII 81

Query: 378 PRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPK 494
           PRHLQLAIRNDEELNKLL  VTIAQGGV+PNI A LLPK
Sbjct: 82  PRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPK 120


>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score =  118 bits (284), Expect = 2e-27
 Identities = 66/104 (63%), Positives = 75/104 (72%), Gaps = 1/104 (0%)
 Frame = +3

Query: 198 RAGLQFPVGRIHRLLRNGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRI 374
           RAGLQFPVGR+ R L+       RVGA + VY AAV+EYL AEVLELAGNAA+D K  RI
Sbjct: 61  RAGLQFPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAKDLKVKRI 120

Query: 375 IPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 506
            PRHLQLAIR DEEL+ L+   TIA GGVLP+I   LL +  EK
Sbjct: 121 TPRHLQLAIRGDEELDTLIR-ATIAGGGVLPHINKQLLIRTKEK 163


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 452 LSDCHTGKEFVQFLVVPYG 396
           LS CH G+  V+ LVV YG
Sbjct: 923 LSACHRGRSMVEKLVVEYG 941


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 413 GTEQTPFRCDNRSR-RSFTKHSSGTTPEEDREESLKNASNSLARTTTTTQHVVD 571
           G E    R D  S  +S  K       +E++++ LKN   S  +    T+H+ D
Sbjct: 53  GIESVGHRIDILSAIQSMKKQQKDKLQQENKDQELKNIEESYKKLEEKTEHLSD 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,748
Number of Sequences: 5004
Number of extensions: 42903
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 667380970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)