Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_H04
         (1169 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    37   0.006

>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 36.7 bits (81), Expect = 0.006
 Identities = 30/131 (22%), Positives = 45/131 (34%)
 Frame = +1

Query: 403 LXAXYDXNXDXXXXEXLXXPXXIWXXXXNXXXTVWEVXGTFPIXWXSVAXXPQRSXVXKX 582
           L   YD   D    E +     +         T+  +  TF I   SVA  PQ   + + 
Sbjct: 82  LRPTYDKRLDTFRTEYILGGCAVLALIYPTSYTISNILWTFSIWLESVAILPQLFMLQRS 141

Query: 583 KKAESXTXHXXLA*GXXKXXXXXNGVXRXVGESXXXXXXXIXGVGQTXXXGXXFNLXITK 762
            + ES T H   A    +     + + R            + G+ QT   G    +    
Sbjct: 142 GETESLTAHYLFAMCLYRGLYIPHWIYRIAVHKKVIGVAILAGIIQTVLYGDFAVVYRRT 201

Query: 763 XXKGKKLQLPA 795
             +GKK +LPA
Sbjct: 202 VLQGKKFRLPA 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,715,177
Number of Sequences: 5004
Number of extensions: 12848
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 627537330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)