Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_H02
(1156 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 56 9e-09
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb... 42 1e-04
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 37 0.006
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 4.9
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 26 8.6
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 56.0 bits (129), Expect = 9e-09
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Frame = +1
Query: 562 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVNVNEEYKGSMVTHN--IQKLGKENI 735
I +V AG H+ + +K VY G N QCG + V +E +G+++T + L N+
Sbjct: 281 IISVGAGSYHSFAIDNKGRVYAWGLNITRQCG--IEVEDEEEGAVITKPTLVDALEGYNV 338
Query: 736 VDVCCGQDHSLFITESGKVYACGWGADGQTGLGNYDNRSTPTAVIGD 876
+ G+ H+L + E G+V A WG D + LG DN + P V+ D
Sbjct: 339 KSITGGEHHTLALLEDGRVLA--WGRDDRHQLGIPDN-ALPETVVKD 382
Score = 54.4 bits (125), Expect = 3e-08
Identities = 58/208 (27%), Positives = 79/208 (37%), Gaps = 3/208 (1%)
Frame = +1
Query: 217 STDRRVYVWGFAETGALGIHLPRXXXXXXXXXXXXXLVWHPMRSSFA-ERFDITNIACGY 393
S D RVY WG + ALG L P + A +T + C
Sbjct: 124 SHDGRVYTWGVNDDYALGRLTKDQKDENGDKVDNDLLEGTPSKVEGALSHLRVTKVICSD 183
Query: 394 GFTVASIKTSEQHKVFGTGINTDSQIGYHSPRRN--HPLELLLSYAPIYIPYKSLECEIK 567
T A+I + +GT +D +GY ++ P ++ L EI
Sbjct: 184 NLT-AAITDNGCCFTWGTFRCSDGVLGYSDSQKRTAEPTQMRLP-------------EIC 229
Query: 568 AVAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVNVNEEYKGSMVTHNIQKLGKENIVDVC 747
+A G H I LT VYT GN Q GR++ +G Q L +NI+ V
Sbjct: 230 QLATGTDHIIALTTTGKVYTWGNGQQFQLGRRMLERRRLQGLTP----QPLALKNIISVG 285
Query: 748 CGQDHSLFITESGKVYACGWGADGQTGL 831
G HS I G+VYA G Q G+
Sbjct: 286 AGSYHSFAIDNKGRVYAWGLNITRQCGI 313
Score = 52.4 bits (120), Expect = 1e-07
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Frame = +1
Query: 562 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVN-----VNEEYKGSMVTHNIQKL-- 720
+K++ G HT+ L + V G + Q G N V ++ KG+ + +
Sbjct: 338 VKSITGGEHHTLALLEDGRVLAWGRDDRHQLGIPDNALPETVVKDEKGNNYYLSTPTIIP 397
Query: 721 GKENIVDVCCGQDHSLFITESGKVYACGWGADGQTGLG-NYDNRSTPTAVIGDITTEKIV 897
G N++ V CG H+L +T GKVY+ G + + G G N ++ + PT V E +
Sbjct: 398 GLTNVIQVVCGTHHNLAVTSDGKVYSWGSAENYEVGQGDNDEDVAVPTLVRSKAIKEVAI 457
Query: 898 KVASTG 915
+VA G
Sbjct: 458 RVAGAG 463
Score = 32.3 bits (70), Expect = 0.13
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +1
Query: 604 TDKEGVYTLGNNAYGQCGR-KVNVNEEYKGSMVTHNIQKLGKENIVDVCCGQDHSLFITE 780
T++ VY G+ + + G + ++ Y+ + + I K +VD+ G HS ++
Sbjct: 68 TERLNVYVFGSGSMNELGMGEEEMDVVYRPRL--NPILSTDKVGVVDLAVGGMHSAALSH 125
Query: 781 SGKVYACGWGADGQTGLG 834
G+VY WG + LG
Sbjct: 126 DGRVYT--WGVNDDYALG 141
Score = 29.5 bits (63), Expect = 0.93
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +1
Query: 733 IVDVCCGQDHSLFITESGKVYACGWGADGQTGLGNYDNRSTPTAVIGDITTEKIVKVAS 909
I + G DH + +T +GKVY G G Q G + R + + I+ V +
Sbjct: 228 ICQLATGTDHIIALTTTGKVYTWGNGQQFQLGRRMLERRRLQGLTPQPLALKNIISVGA 286
>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 351
Score = 42.3 bits (95), Expect = 1e-04
Identities = 41/155 (26%), Positives = 61/155 (39%), Gaps = 2/155 (1%)
Frame = +1
Query: 370 ITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPRRNHPLELLLS--YAPIYIPY 543
I I+CG T+ E +++ G N Q GY PL LS Y I+
Sbjct: 33 IEKISCGGNHTLL---LDEDSQLWACGDNRKGQCGYEV---KEPLYNPLSPDYLRIFTRV 86
Query: 544 KSLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVNVNEEYKGSMVTHNIQKLG 723
S E + I+ D+ V + G G+ G+ N + + +
Sbjct: 87 -SHERWVFLTCGWEFSVIVHADRRRVCSCGEGLSGELGQGNRSNSQGLREIDIPYLDD-- 143
Query: 724 KENIVDVCCGQDHSLFITESGKVYACGWGADGQTG 828
KE I+D+ G H + +T G +Y CG G GQ G
Sbjct: 144 KEFIIDISAGLRHWICVTNEGNLYGCGDGRKGQLG 178
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 36.7 bits (81), Expect = 0.006
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Frame = +1
Query: 532 YIPYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVNVNEEYKGSMVT-HN 708
+IP + ++ ++ H++ LT +Y+ G N G+ G + ++ +T
Sbjct: 239 FIPIPGIIHKVIQISVSHTHSLALTKFGSIYSWGKNGSGELGLSNDELKKDDPIQITPRR 298
Query: 709 IQKLGKENIVDVCCGQDHSLFITESGKVYACGWGA-DGQTGLGNYDN-RSTPTAVIG 873
I I+ + G+ +S+ T++ +Y+ WG +GQ G+ ++ + STP V G
Sbjct: 299 ISAFKDYQIIGMAAGKSYSVAWTDT-DIYS--WGLNNGQLGISDHISVVSTPRRVAG 352
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.1 bits (57), Expect = 4.9
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 366 KSLCKRRPHWMPNQFEVVFVTFFPFLATWEVDTQSTCLSKSPHIDSS 226
KSLC H+ PN E+V + +W++ L P ID+S
Sbjct: 101 KSLCLNIFHFDPNTLEIVMEKIY----SWDIFRLQEVLKTVPKIDTS 143
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 26.2 bits (55), Expect = 8.6
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 508 LLLSYAPIYI-PYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRK 663
++ +Y P+ + + ECE A+ + T+++ V T+ NNA Q K
Sbjct: 450 MVKNYNPVIVFSFSKRECEALALQMSKLDMNDQTERDLVTTIFNNAVNQLSEK 502
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,315,245
Number of Sequences: 5004
Number of extensions: 90159
Number of successful extensions: 247
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 617576420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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