Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_H02
         (1156 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   2.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   5.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   6.7  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +1

Query: 787 KVYACG--WGADGQTG--LGNYDNRSTPTAVIGDITTEKIVKV 903
           +V AC   WG D      LGN      P  +I D+ T+KI+++
Sbjct: 116 RVDACDRLWGVDTGVDDILGNNTVIHQPRIIIIDLKTDKILRI 158


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 688 GSMVTHNIQKLGKENIVDVC 747
           GS+  +NI  +  +NI+D+C
Sbjct: 73  GSVPVNNINLILLQNIIDIC 92


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 731 FSFPSFCMLWVTILPLY 681
           F+  + C++W+  +PLY
Sbjct: 852 FTMYTTCVIWLAFVPLY 868


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 293,007
Number of Sequences: 438
Number of extensions: 6545
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 39162825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)