Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_H01
         (1225 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.57 

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 24/81 (29%), Positives = 24/81 (29%), Gaps = 3/81 (3%)
 Frame = +1

Query: 889  PCRLPETCPPFPLREAXPFXIAPRXXFPXRGXXXPPXXAGX--PKPPXXXRXXXPXPGXX 1062
            P   P   PP P     P   AP    P  G    P  A    P PP       P P   
Sbjct: 1151 PVPAPSGAPPVP----KPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVG 1206

Query: 1063 SXXXPPPGKTXXFP-PXAXXP 1122
                PPP      P P A  P
Sbjct: 1207 VPPVPPPSTAPPVPTPSAGLP 1227



 Score = 27.5 bits (58), Expect = 4.0
 Identities = 21/91 (23%), Positives = 26/91 (28%)
 Frame = +1

Query: 874  PXLXRPCRLPETCPPFPLREAXPFXIAPRXXFPXRGXXXPPXXAGXPKPPXXXRXXXPXP 1053
            P    P  +P + PP P   +      P    P       P  +G P P        P P
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAP-PVPAPSGIPPVP 1095

Query: 1054 GXXSXXXPPPGKTXXFPPXAXXPGXXGXXKP 1146
                   P P  +   PP     G     KP
Sbjct: 1096 KPSVAAPPVPKPSVAVPPVPAPSGAPPVPKP 1126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,298,869
Number of Sequences: 5004
Number of extensions: 22188
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 663396606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)