Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_G23
         (1140 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   3.7  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   8.5  

>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 545 CLLLFQWGFEEGQTAFFDCFNIISLVCTIHKICKLY 438
           CL  FQW    G   F  C+ +  +VC +  +C+LY
Sbjct: 16  CLERFQW---RG-AIFLVCYPLYCVVCFVSVLCRLY 47


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 568 VFIITHHXVYYYFNGDLKRDKRHFSI 491
           + ++T + +  YF  DLKR+ R F I
Sbjct: 519 IVVVTMYDIIVYFLSDLKRNARSFFI 544


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,242
Number of Sequences: 5004
Number of extensions: 47725
Number of successful extensions: 102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 607615510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)