Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_G23
         (1140 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    25   1.6  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   3.8  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   8.8  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 215 DSWHYWLIPLKTKERHHYQGINSLYTRKPKNSQD 114
           D+W    +P + KE+H  Q INS    K +N  D
Sbjct: 114 DTW----VPHELKEKHLTQRINSCDLLKKRNEND 143


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -2

Query: 320 KI*YTCQRRSISNNSNYDK*TVNPF*STNDHFKCHDSWHY 201
           KI  +   ++I NN+NY+    N +   N+++  +   +Y
Sbjct: 80  KIISSLSNKTIHNNNNYNNNNYNNYNYNNNNYNNYKKLYY 119


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -3

Query: 184 KRKNDTTIKESTVYTHENQRTH 119
           +++ + T ++S V+ H+N R H
Sbjct: 107 EKRPELTNRKSVVFHHDNARPH 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,602
Number of Sequences: 438
Number of extensions: 3953
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 38560320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)