Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_G21
         (1233 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   7.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   7.1  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 19/87 (21%), Positives = 23/87 (26%)
 Frame = -2

Query: 587 PPXPXXLPXGXPPXGXXTXXPPPXXAXXPRPXXXPXXXXRXPXXXAGXPXKXXPXXXXRT 408
           PP     P         T  PP      P P   P    + P   +  P    P    ++
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183

Query: 407 XXXXPXXPPPXPPPXAKNXQXPXXWXP 327
               P  P   PP   K    P    P
Sbjct: 184 PPSAPSLPSAVPPMPPKVPPPPLSQAP 210


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 20/85 (23%), Positives = 21/85 (24%)
 Frame = -1

Query: 594 RXPPXTXPXXAGXPPXXXGDXXXPPGXXXXPTPPXXPXXXXXXXXXRXGXXXKTXPXXXX 415
           R P  + P     PP   G    PP     P  P                          
Sbjct: 244 RVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVS--MNPAINSTSKPPLPPPSSRVSA 301

Query: 414 ADXXPXPXXPPPXPPPXRXKXTAPP 340
           A        PPP PPP R     PP
Sbjct: 302 AALAANKKRPPPPPPPSRRNRGKPP 326



 Score = 26.6 bits (56), Expect = 7.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 387 PPPXPPPXRXKXTAPPXLXP 328
           PPP PPP     ++PP   P
Sbjct: 253 PPPIPPPSNGTVSSPPNSPP 272


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 15/53 (28%), Positives = 15/53 (28%)
 Frame = -2

Query: 527 PPPXXAXXPRPXXXPXXXXRXPXXXAGXPXKXXPXXXXRTXXXXPXXPPPXPP 369
           PPP     P P   P           G P    P          P  PPP PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG---VAGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.154    0.558 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,069,617
Number of Sequences: 5004
Number of extensions: 8848
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 669373152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)