Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_G19
         (1218 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0537 + 25363026-25363217,25363672-25363828,25364660-253646...    36   0.049
03_03_0158 - 14951504-14951568,14952722-14952797,14952876-149529...    32   1.0  
08_02_0588 + 19036509-19039235                                         25   2.2  
10_08_0798 + 20649370-20649428,20649515-20649719                       30   3.2  

>03_05_0537 +
           25363026-25363217,25363672-25363828,25364660-25364694,
           25364803-25364848,25365277-25365311
          Length = 154

 Score = 36.3 bits (80), Expect = 0.049
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +1

Query: 169 TXALYATVLPE-KRVFVNKG-RCVELXLRKEKTDGPFWPTLTKXKKKPHYLKIDFNKW 336
           T  L+ +VLPE  +     G R +   ++KEK    +W  L K ++K  Y+K+D+NKW
Sbjct: 54  TLELFDSVLPEGSKTKTKMGLRNIICSIQKEKKG--WWKRLLKSEEKHPYIKVDWNKW 109


>03_03_0158 -
           14951504-14951568,14952722-14952797,14952876-14952943,
           14952997-14953156,14953239-14953425,14953982-14953986
          Length = 186

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +1

Query: 253 EKTDGPFWPTLTKXKKKPH-YLKIDFNKW 336
           +K +  +WP L K + KP  +LK+D++KW
Sbjct: 80  KKAESKWWPRLLKKEGKPPVFLKVDWDKW 108


>08_02_0588 + 19036509-19039235
          Length = 908

 Score = 24.6 bits (51), Expect(2) = 2.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 384 ANAPELWWSWWSW 422
           AN   ++W+WW W
Sbjct: 10  ANLVRVFWAWWWW 22



 Score = 24.6 bits (51), Expect(2) = 2.2
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +3

Query: 402 WWSWWSWAE 428
           WW WW W +
Sbjct: 20  WWWWWWWGD 28


>10_08_0798 + 20649370-20649428,20649515-20649719
          Length = 87

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +3

Query: 135 CRCAGSSPPCGHXSTVRHCSSGKACFCK*GQMCGAXIT 248
           CRC   S P G  +    CS G +C C     CG+  T
Sbjct: 46  CRCGRESQPTGRENRRAGCSCGDSCTC---ASCGSTTT 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,896,987
Number of Sequences: 37544
Number of extensions: 250281
Number of successful extensions: 640
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3736328292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)