Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_G19
         (1218 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57840| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.021
SB_33072| Best HMM Match : Arm (HMM E-Value=0.00043)                   38   0.021
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.5  
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)                     29   7.5  
SB_16169| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.9  

>SB_57840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 37.5 bits (83), Expect = 0.021
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +1

Query: 226 RCVELXLRKEKTDGPFWPTLTKXKKKPHYLKIDFNKW 336
           R VE  + K+K    FW  L   +K+P++LKI+F++W
Sbjct: 37  RYVEFSIAKQKGREFFWQRLVDSEKRPNWLKINFDRW 73


>SB_33072| Best HMM Match : Arm (HMM E-Value=0.00043)
          Length = 701

 Score = 37.5 bits (83), Expect = 0.021
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = +1

Query: 196 PEKRVFVNKGRCVELXLRKEKTDGPFWPTLTKXKKKPHYLKIDFNKW 336
           P++ V   KG  + + LRK + D   WP L K K+K  Y+ IDF++W
Sbjct: 595 PQECVVDVKGSEILVLLRKARGDE--WPRLLKSKEKYPYISIDFDRW 639


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +3

Query: 126 FSRCRCAGSSPPCGHXSTVRHCSSGKACFCK*G 224
           F+ C  A   PPC     V    SG  C C  G
Sbjct: 465 FTECSAAALHPPCDTLCVVADTDSGYQCLCNPG 497


>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
          Length = 319

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -3

Query: 484 VNSHHQSQFPSHQTKVFLPSAQDHQLHQSSGAFARNHM-NYFLQLHHPHHSIC*N 323
           +N HHQS   +HQ+        +H  HQSS     +H  +  +  HH   +I  N
Sbjct: 245 INHHHQSSIINHQSSSSSSIIINH--HQSSSIIINHHQSSSIINNHHQSSTIIIN 297


>SB_16169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 646

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 478 SHHQSQFPSHQTKVFL-PSAQDHQLHQSSGAFARNHMNYFLQL 353
           +HHQ +  +H   + L P  Q +  H    AFA NH+N  L L
Sbjct: 163 NHHQREEHAHLHHLILNPVFQQYSKHFLKEAFALNHLNRKLTL 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,877,414
Number of Sequences: 59808
Number of extensions: 272217
Number of successful extensions: 1322
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 3787024785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)