Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_G19
(1218 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13642-6|AAG00038.1| 175|Caenorhabditis elegans Hypothetical pr... 39 0.006
Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical pr... 32 0.94
Z48241-4|CAA88284.1| 468|Caenorhabditis elegans Hypothetical pr... 30 3.8
Z48241-3|CAC42265.1| 490|Caenorhabditis elegans Hypothetical pr... 30 3.8
AF241847-1|AAF71523.1| 468|Caenorhabditis elegans LAG-3B protein. 30 3.8
AF241846-1|AAF71522.1| 490|Caenorhabditis elegans LAG-3A protein. 30 3.8
Z68753-6|CAD45610.1| 597|Caenorhabditis elegans Hypothetical pr... 29 6.7
Z68753-5|CAB54512.2| 613|Caenorhabditis elegans Hypothetical pr... 29 6.7
Z68753-4|CAB54511.2| 606|Caenorhabditis elegans Hypothetical pr... 29 6.7
AY043268-1|AAK85706.1| 606|Caenorhabditis elegans CCR4 protein. 29 6.7
>U13642-6|AAG00038.1| 175|Caenorhabditis elegans Hypothetical
protein ZC395.10 protein.
Length = 175
Score = 39.1 bits (87), Expect = 0.006
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Frame = +1
Query: 226 RCVELXLRKEKTDGPFWPTLTKXKKKPHYLKIDFNKWXXXXXXXXXXXS----------- 372
R VE+ ++K KT +WP L + K K H+LK+DF KW +
Sbjct: 71 RVVEITVQK-KTPA-WWPRLLQNKGKVHWLKVDFGKWKDEDEDDEAEDAGAGIGGGMANG 128
Query: 373 YDFEQMLQNFGGAGG 417
+D Q + GGAGG
Sbjct: 129 FDLNQYMSQMGGAGG 143
>Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical
protein C33G3.6 protein.
Length = 624
Score = 31.9 bits (69), Expect = 0.94
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 475 HHQSQFPSHQTKVFLPSAQDHQLHQSSGAFARNH--MNYFLQLHHPHHSIC*NQFS 314
HHQ SH + S + +Q Q +G++ RN+ N Q ++P++ + N S
Sbjct: 390 HHQHHQQSHDQNSTISSVEYNQYQQKAGSYGRNYHPYNNHHQQYNPYNQVLENSSS 445
>Z48241-4|CAA88284.1| 468|Caenorhabditis elegans Hypothetical
protein C32A3.1b protein.
Length = 468
Score = 29.9 bits (64), Expect = 3.8
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -3
Query: 487 QVNSHHQSQFPSHQTKVFLPSAQDHQLHQSSGAFARNHM 371
Q HQ Q HQ +P+ Q+H A+ +HM
Sbjct: 420 QAQQQHQQQAQHHQMGYGIPNGYPQQMHMHPPAYGAHHM 458
>Z48241-3|CAC42265.1| 490|Caenorhabditis elegans Hypothetical
protein C32A3.1a protein.
Length = 490
Score = 29.9 bits (64), Expect = 3.8
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -3
Query: 487 QVNSHHQSQFPSHQTKVFLPSAQDHQLHQSSGAFARNHM 371
Q HQ Q HQ +P+ Q+H A+ +HM
Sbjct: 442 QAQQQHQQQAQHHQMGYGIPNGYPQQMHMHPPAYGAHHM 480
>AF241847-1|AAF71523.1| 468|Caenorhabditis elegans LAG-3B protein.
Length = 468
Score = 29.9 bits (64), Expect = 3.8
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -3
Query: 487 QVNSHHQSQFPSHQTKVFLPSAQDHQLHQSSGAFARNHM 371
Q HQ Q HQ +P+ Q+H A+ +HM
Sbjct: 420 QAQQQHQQQAQHHQMGYGIPNGYPQQMHMHPPAYGAHHM 458
>AF241846-1|AAF71522.1| 490|Caenorhabditis elegans LAG-3A protein.
Length = 490
Score = 29.9 bits (64), Expect = 3.8
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -3
Query: 487 QVNSHHQSQFPSHQTKVFLPSAQDHQLHQSSGAFARNHM 371
Q HQ Q HQ +P+ Q+H A+ +HM
Sbjct: 442 QAQQQHQQQAQHHQMGYGIPNGYPQQMHMHPPAYGAHHM 480
>Z68753-6|CAD45610.1| 597|Caenorhabditis elegans Hypothetical
protein ZC518.3c protein.
Length = 597
Score = 29.1 bits (62), Expect = 6.7
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +2
Query: 329 TNGMMRMMKLKKIIHMISSKCSRTLVELVVLGRRQKNLRLMTWKLTLMMRIYLIWNKMT 505
TNGM R+ ++ + S + +R EL + GR KNL W+LT + ++L N +T
Sbjct: 35 TNGMSRVHRVLTEDEIASGRSTRW-TELEIHGR-VKNLSPSLWQLTHLSALFLNNNGLT 91
>Z68753-5|CAB54512.2| 613|Caenorhabditis elegans Hypothetical
protein ZC518.3b protein.
Length = 613
Score = 29.1 bits (62), Expect = 6.7
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +2
Query: 329 TNGMMRMMKLKKIIHMISSKCSRTLVELVVLGRRQKNLRLMTWKLTLMMRIYLIWNKMT 505
TNGM R+ ++ + S + +R EL + GR KNL W+LT + ++L N +T
Sbjct: 51 TNGMSRVHRVLTEDEIASGRSTRW-TELEIHGR-VKNLSPSLWQLTHLSALFLNNNGLT 107
>Z68753-4|CAB54511.2| 606|Caenorhabditis elegans Hypothetical
protein ZC518.3a protein.
Length = 606
Score = 29.1 bits (62), Expect = 6.7
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +2
Query: 329 TNGMMRMMKLKKIIHMISSKCSRTLVELVVLGRRQKNLRLMTWKLTLMMRIYLIWNKMT 505
TNGM R+ ++ + S + +R EL + GR KNL W+LT + ++L N +T
Sbjct: 44 TNGMSRVHRVLTEDEIASGRSTRW-TELEIHGR-VKNLSPSLWQLTHLSALFLNNNGLT 100
>AY043268-1|AAK85706.1| 606|Caenorhabditis elegans CCR4 protein.
Length = 606
Score = 29.1 bits (62), Expect = 6.7
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +2
Query: 329 TNGMMRMMKLKKIIHMISSKCSRTLVELVVLGRRQKNLRLMTWKLTLMMRIYLIWNKMT 505
TNGM R+ ++ + S + +R EL + GR KNL W+LT + ++L N +T
Sbjct: 44 TNGMSRVHRVLTEDEIASGRSTRW-TELEIHGR-VKNLSPSLWQLTHLSALFLNNNGLT 100
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,240,150
Number of Sequences: 27780
Number of extensions: 219084
Number of successful extensions: 604
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3359895476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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