Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_G18
(1213 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 249 7e-67
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 59 1e-09
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 40 7e-04
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 33 0.11
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.18
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 28 2.3
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 4.0
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c... 27 5.2
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 27 6.9
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 26 9.2
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 249 bits (609), Expect = 7e-67
Identities = 127/184 (69%), Positives = 141/184 (76%), Gaps = 1/184 (0%)
Frame = +3
Query: 348 DNLPPILNALEVQ-NRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIP 524
D+LP ILNALEV+ + RLVLEVAQH+GENTVRTIAMDGTEGLVRG V+D+GSPI IP
Sbjct: 73 DSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDTGSPISIP 132
Query: 525 VGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAP 704
VG TLGRI+NVIGEP+DERGPI K + IHA+AP F + S EIL TGIKVVDLLAP
Sbjct: 133 VGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIKVVDLLAP 192
Query: 705 YAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGV 884
YA TV I ELINN+AKAHGGYSVF GVGERTREGNDLY EM E+GV
Sbjct: 193 YARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGYSVFTGVGERTREGNDLYREMQETGV 252
Query: 885 ISLK 896
I L+
Sbjct: 253 IKLE 256
Score = 76.2 bits (179), Expect = 9e-15
Identities = 36/44 (81%), Positives = 38/44 (86%)
Frame = +2
Query: 905 SKVALVYGQMNEPPGARARVALXGLTXAEYFRDQXGKDVLXFID 1036
SK ALV+GQMNEPPGARARVAL GLT AEYFRD G+DVL FID
Sbjct: 259 SKAALVFGQMNEPPGARARVALTGLTVAEYFRDIEGQDVLLFID 302
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 59.3 bits (137), Expect = 1e-09
Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 8/163 (4%)
Frame = +3
Query: 414 VAQHLGENTVRTIAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 590
+A +L +TV + G + LVR G+ V + + +PVG LGR+++ +G PID +GP
Sbjct: 90 MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148
Query: 591 IPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIM 770
I T + + +AP + + E + TG+K +D + P T + +
Sbjct: 149 IKTTERRRVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGRGQRELIIGDRQTGKTAIAL 208
Query: 771 ELINNVAKAHGG-------YSVFAGVGERTREGNDLYHEMIES 878
+ I N + + Y V+ VG++ L ++ E+
Sbjct: 209 DTILNHKRWNNSSDESKKLYCVYVAVGQKRSTVAQLVQKLEEN 251
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 39.9 bits (89), Expect = 7e-04
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Frame = +3
Query: 405 VLEVAQHLGENTVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 581
VLEVA H V +GT G+ VR + +G +RIPV + LGR+ N G PID+
Sbjct: 63 VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDK 118
Query: 582 RGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVD 692
+ + I+ +E++ TGI +D
Sbjct: 119 GPNLLAEDYLDINGSPINPYARIYPEEMIQTGISSID 155
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 32.7 bits (71), Expect = 0.11
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +2
Query: 908 KVALVYGQMNEPPGARARVALXGLTXAEYFRDQXGKDVLXFID 1036
+ LV N P AR G+T AEY+RDQ GK+V D
Sbjct: 316 RTTLVANTSNMPVAAREASIYTGITLAEYYRDQ-GKNVSMMAD 357
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.9 bits (69), Expect = 0.18
Identities = 24/90 (26%), Positives = 38/90 (42%)
Frame = -1
Query: 679 IPVTRISCCTDMSTNSGASAWIAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRMGEPE 500
+P T SC T S +G S+ ++ ++ + P S+ + I + S T P
Sbjct: 222 LPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTN-SSPLPT 280
Query: 499 SSTGCPRTKPSVPSMAMVRTVFSPKCCATS 410
+ST C T S+P T +P TS
Sbjct: 281 TSTSC-TTSTSIPPTGNSTTPVTPTVPPTS 309
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 28.3 bits (60), Expect = 2.3
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -3
Query: 113 ELVTKITNS*RNDPSSADGRMRAVSKXXRIPYRRR 9
ELV + T S + DP+ R R V+K P RRR
Sbjct: 43 ELVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRR 77
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 589 GPRSSIGSPITLMMRPRVSA-PTGIRMGEPESSTGCPRTKPSVPSM 455
G R++ G+P + R+++ PT I PES K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199
>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 585
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +1
Query: 25 ILXXFDTARIRPSALDGSLRQEFVIFVTSSILLCCLSTKFSKILSKCFLLSAE*AVW 195
+L DT R L SL F+ V ++ ++ + +S+CF+L+ W
Sbjct: 324 LLKDTDTIMKRVPLLQNSLLSSFIAIVKPNLTFTDIANRLGISVSECFILAKHLIHW 380
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 26.6 bits (56), Expect = 6.9
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = +3
Query: 396 PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPI 575
P + E +H G N+ EG+V+ L++ P+ IPV + N IGE
Sbjct: 10 PAIKNEPPKHYGPNSA------DREGIVKAYKELEAELPVTIPVIIDGKEVETNTIGE-- 61
Query: 576 DERGPIPTDKTAA-IHAEAPEFVDMSVQQEILVTGIKVVDLLAPYA 710
+R P K A H + V+ ++ E + G KV + L P+A
Sbjct: 62 -QRCPFEHKKVVARYHRAGAKHVEDAI--EAALRGKKVWESL-PFA 103
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 375 GHLGSAASCLQTEHPLRHQ*RQLP 304
G GSA SCL H L H +Q P
Sbjct: 140 GFAGSAISCLVWAHQLLHPNKQFP 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,505,480
Number of Sequences: 5004
Number of extensions: 93537
Number of successful extensions: 268
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 655427878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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