Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_G18
         (1213 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   9.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   9.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   9.4  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 802 PWALATLLISSIINTV 755
           PW L TL++ +I+N +
Sbjct: 63  PWILVTLIVLAIVNVM 78


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 674 WYKSRRSARSLCQRW 718
           W+ S RSAR + Q W
Sbjct: 573 WHPSDRSARLMLQPW 587


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -2

Query: 102 ENHKFLT*RSVQCRWADASGIEXXKN 25
           +NH F+  ++++  + + SGIE  +N
Sbjct: 810 QNHVFIGRKNMRVLYVNGSGIESIQN 835


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 876 IQSSRGISHCLHEYALLLQQTQSNHH 799
           I S   +   + +++L LQQ Q  HH
Sbjct: 82  ILSPTQLQSFMQQHSLYLQQQQQQHH 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 312,525
Number of Sequences: 438
Number of extensions: 7076
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41452344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)