Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_G17
         (1266 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    36   0.012
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    36   0.016
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.11 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.45 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.4  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    29   1.4  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   4.2  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.5  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   7.3  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    27   7.3  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    26   9.6  

>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
            protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 35.9 bits (79), Expect = 0.012
 Identities = 21/57 (36%), Positives = 21/57 (36%)
 Frame = -1

Query: 1062 PKXXPPXPPXGEXPXPPPXG*XGGXXGXXGXGXGGXGGGXXKXXGXGGXRXXGVXGG 892
            PK   P  P G    P   G  GG  G  G   GG GG      G GG    G  GG
Sbjct: 119  PKTVGPKKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGN--SRGGFGGGSRGGFGGG 173


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 35.5 bits (78), Expect = 0.016
 Identities = 24/69 (34%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
 Frame = +2

Query: 800  PXGVPXRPKPXXXWX-AGFPEXGXPK--KXXXGGPPXTPXXRXPPXPXIXFXPPPXPPXP 970
            P G P  PKP         P  G P   K   G PP  P    PP P      PP PP P
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP-P 1213

Query: 971  XPXXPXKPP 997
                P   P
Sbjct: 1214 STAPPVPTP 1222



 Score = 29.5 bits (63), Expect = 1.0
 Identities = 20/66 (30%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
 Frame = +2

Query: 806  GVPXRPKPXXXWXAGFPEXGXPK--KXXXGGPPXTPXXRXPPXPXIXFXPPPXPPXPXPX 979
            G+P  PKP        P    P   K   G PP  P    PP P      PP P      
Sbjct: 1177 GIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKA 1236

Query: 980  XPXKPP 997
             P   P
Sbjct: 1237 PPVPAP 1242



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 17/64 (26%), Positives = 18/64 (28%)
 Frame = +2

Query: 806  GVPXRPKPXXXWXAGFPEXGXPKKXXXGGPPXTPXXRXPPXPXIXFXPPPXPPXPXPXXP 985
            G P  P P     +  P    P     G PP       PP P      PP P       P
Sbjct: 1058 GAPSAPPPVPAPSSEIPSIPAPS----GAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPP 1113

Query: 986  XKPP 997
               P
Sbjct: 1114 VPAP 1117



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 19/68 (27%), Positives = 19/68 (27%), Gaps = 2/68 (2%)
 Frame = +2

Query: 800  PXGVPXRPKPXXXWXAGFPEXGXPK--KXXXGGPPXTPXXRXPPXPXIXFXPPPXPPXPX 973
            P G P  PKP           G P   K     PP       PP P      PP P    
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176

Query: 974  PXXPXKPP 997
               P   P
Sbjct: 1177 GIPPVPKP 1184


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 30/121 (24%), Positives = 34/121 (28%), Gaps = 4/121 (3%)
 Frame = +2

Query: 740  PPXXPXXXXXGNPXXGXXXXPXGVPXRPKPXXXWXAG-FPEXGXPKKXXXGGPPXT-PXX 913
            PP  P     G P  G       +P  P P     AG  P     +      PP + P  
Sbjct: 313  PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372

Query: 914  RXPPXPXIXFXPPPXPPXPXPXXPXK--PPFXPXGGGXGXSPXGGXGGXXLGPXXXXGXP 1087
               P P         PP P P  P +  P   P G     S         L P      P
Sbjct: 373  GRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLP 432

Query: 1088 P 1090
            P
Sbjct: 433  P 433



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 19/67 (28%), Positives = 20/67 (29%), Gaps = 5/67 (7%)
 Frame = +2

Query: 812 PXRPKPXXXWXAGFPEXGXPKKXXXGGPPXTPXXRX-----PPXPXIXFXPPPXPPXPXP 976
           P  P P      G P  G         PP  P         P  P     PPP PP   P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370

Query: 977 XXPXKPP 997
               +PP
Sbjct: 371 STGRQPP 377


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.45
 Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
 Frame = +2

Query: 893  PPXTPXXRXPPXPXIXFXPPPXPP-----XPXPXXPXKPPFXPXGGGXGXSP 1033
            P   P    PP P +   PPP PP        P  P  PP    GG    +P
Sbjct: 744  PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795



 Score = 29.9 bits (64), Expect = 0.78
 Identities = 18/54 (33%), Positives = 19/54 (35%)
 Frame = +2

Query: 872  KKXXXGGPPXTPXXRXPPXPXIXFXPPPXPPXPXPXXPXKPPFXPXGGGXGXSP 1033
            +K     PP  P     P P     P P PP P    P  PP  P   G G  P
Sbjct: 725  QKLLLKSPPPPPPAVIVPTPAPAPIPVP-PPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -3

Query: 1081 PXGXXGPQXXPPPPPXXGXPXPPP 1010
            P     P   PPP P  G P PPP
Sbjct: 742  PTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = -3

Query: 1111 PGGKXTPXGXPXGXXGPQXXPPPPPXXGXPXPPP 1010
            P     P   P    G    PPPPP      PPP
Sbjct: 744  PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 27.5 bits (58), Expect = 4.2
 Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
 Frame = -2

Query: 1094 PXGGPXGXXGAPKXXPPXP-LXGXXPXPPPXXKXGVXXG 981
            P   P    G P   PP P + G  P PPP     V  G
Sbjct: 750  PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 1066 GPQXXPPPPPXXGXPXPPP 1010
            GP   PPPP   G   PPP
Sbjct: 760  GPPPPPPPPGVAGAGPPPP 778


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 15/51 (29%), Positives = 16/51 (31%)
 Frame = +2

Query: 854  PEXGXPKKXXXGGPPXTPXXRXPPXPXIXFXPPPXPPXPXPXXPXKPPFXP 1006
            P    P +     PP       PP P     PP  PP P       PP  P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/45 (33%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
 Frame = -3

Query: 1129 PXXKXPPGGKXTPXGXPXGXXGPQXXPPPP-PXXGXPXPPPLGXK 998
            P    PP     P   P    GP   PPPP P    P  P  G +
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDR 1749


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 893 PPXTPXXRXPPXPXIXFXPPPXPPXPXP 976
           PP  P    PP P   F PP  PP P P
Sbjct: 5   PPGNPP---PPPPPPGFEPPSQPPPPPP 29



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -3

Query: 1111 PGGKXTPXGXPXGXXGPQXXPPPPP 1037
            P G   P   P G   P   PPPPP
Sbjct: 5    PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 947  PPPXPPXPXPXXPXKPPFXPXGG 1015
            PPP PP P    P +PP  P  G
Sbjct: 9    PPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -3

Query: 1114 PPGGKXTPXGXPXGXXGPQXXPPPPP 1037
            PPG    P   P      Q  PPPPP
Sbjct: 5    PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 147

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
 Frame = -3

Query: 1111 PGGKXTPXGX-PXGXXGP-----QXXPPPPPXXGXPXPPP 1010
            P G+  P G  P G  GP        PPPP   G   PPP
Sbjct: 103  PAGRGIPLGQAPVGLAGPVRGVGYTAPPPPAGFGRGAPPP 142


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 905 PXXRXPPXPXIXFXPPPXPPXPXP 976
           P    PP P + F P   PP P P
Sbjct: 164 PNPAMPPIPFLPFNPAAQPPFPPP 187


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 20/48 (41%), Positives = 20/48 (41%)
 Frame = -1

Query: 1005 G*XGGXXGXXGXGXGGXGGGXXKXXGXGGXRXXGVXGGPPXXXFXGXP 862
            G  GG  G    G GG GGG     G GG    G  GGP    F G P
Sbjct: 224  GGFGGGPGGFEGGPGGFGGG---PGGFGGG-LGGFGGGP--GGFGGGP 265


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = +2

Query: 893 PPXTPXXRXP-PXPXIXFXPPPXPPXPXPXXPXKPP 997
           P  TP    P P P +   PPP PP      P  PP
Sbjct: 725 PQVTPAPPTPAPTPAVKHHPPP-PPVRSSISPSMPP 759


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 143

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 16/45 (35%), Positives = 16/45 (35%)
 Frame = -1

Query: 1047 PXPPXGEXPXPPPXG*XGGXXGXXGXGXGGXGGGXXKXXGXGGXR 913
            P PP G    P   G   G       G GG GGG     G  G R
Sbjct: 99   PPPPRGPLFGPRIGGGHHGPLHGPHGGFGGRGGGRMGGRGGRGRR 143


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +2

Query: 920 PPXPXIXFXPPPXPPXPXPXXPXKPP 997
           P  P +   P P PP   P  P  PP
Sbjct: 413 PSMPHVQGFPAPFPPFMMPGLPQMPP 438


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.154    0.534 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,141,614
Number of Sequences: 5004
Number of extensions: 48375
Number of successful extensions: 200
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 687563588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)