Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_G14
(1272 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 35 0.021
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.19
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.26
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.59
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.59
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 9.7
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 35.1 bits (77), Expect = 0.021
Identities = 26/95 (27%), Positives = 26/95 (27%)
Frame = +2
Query: 665 GGLFRXXXXXXXXXGXXXGGXGXXPPXGGGGGXXXPXENPXXXRGGXGXXKGXNPXXAXX 844
G LF G GG G PP GG G GG G G
Sbjct: 177 GNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGG 236
Query: 845 XGXPXGAXXRGGXSXKXXGGGXXGXXPXRGGXXXP 949
G G G GGG G GG P
Sbjct: 237 PGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.19
Identities = 27/106 (25%), Positives = 30/106 (28%)
Frame = -3
Query: 907 PPPPXFXGXSPPXPXPXGXPXLXGXXXVXALXXPXXXPXXSGVFPGXXGXPPPPXGGXXT 728
PP P +PP P P G P + V A P V G PP P
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVP-KPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEA- 1197
Query: 727 XPPXXXXXXXASXXXXXEEXXXXXXXXPGXXPVPXXXGXSPPXPXP 590
PP G PVP +PP P P
Sbjct: 1198 -PPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 29.9 bits (64), Expect = 0.78
Identities = 27/106 (25%), Positives = 31/106 (29%)
Frame = -3
Query: 907 PPPPXFXGXSPPXPXPXGXPXLXGXXXVXALXXPXXXPXXSGVFPGXXGXPPPPXGGXXT 728
PP P +PP P P G P + V A P P + P PP
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVP-KPSVAA--PPVPAPSGAPPVPKPSVAAPPVPAPSSG 1177
Query: 727 XPPXXXXXXXASXXXXXEEXXXXXXXXPGXXPVPXXXGXSPPXPXP 590
PP E G PVP +PP P P
Sbjct: 1178 IPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVP-PPSTAPPVPTP 1222
Score = 26.6 bits (56), Expect = 7.3
Identities = 25/98 (25%), Positives = 26/98 (26%), Gaps = 1/98 (1%)
Frame = -1
Query: 936 PPRXGXXPXXPPPXXFXXXPPRXXAPXGXPXXXA-FXGXXPFXXPXPPRXXXGFSXGXXX 760
PP P P PP G P G P P S G
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
Query: 759 PPPPPXGGXKPXPPXXXPXXXXXXXXXRKSPPXPXPLS 646
PPP P P P K+PP P P S
Sbjct: 1210 VPPPSTAPPVPTPSAGLPPVPVPTA---KAPPVPAPSS 1244
Score = 26.2 bits (55), Expect = 9.7
Identities = 24/115 (20%), Positives = 28/115 (24%), Gaps = 1/115 (0%)
Frame = -3
Query: 931 PXGXXPXXPPPPXFXGXSPPXPXPXG-XPXLXGXXXVXALXXPXXXPXXSGVFPGXXGXP 755
P PP P +PP P P P + + P P G
Sbjct: 1004 PAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPS-A 1062
Query: 754 PPPXGGXXTXPPXXXXXXXASXXXXXEEXXXXXXXXPGXXPVPXXXGXSPPXPXP 590
PPP + P A PVP PP P P
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAP 1117
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.5 bits (68), Expect = 0.26
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -3
Query: 931 PXGXXPXXPPPPXFXGXS-PPXPXPXG 854
P G P PPPP F S PP P P G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -1
Query: 819 PFXXPXPPRXXXGFSXGXXXPPPPPXGGXK 730
P P PP GF PPPPP G K
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVK 34
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = -1
Query: 771 GXXXPPPPPXGGXKPXPPXXXPXXXXXXXXXRKSP 667
G PPPPP G P P P K+P
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.59
Identities = 36/137 (26%), Positives = 37/137 (27%), Gaps = 1/137 (0%)
Frame = -2
Query: 917 PPXXPPPXXXGXLPPGPXPXGXXPSXXXFXGXXPXXAPXXPGXFXGFPXVXGXPPPPXXG 738
PP PPP G P G S P G P PPPP
Sbjct: 311 PPPPPPPSRRNR---GKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP- 366
Query: 737 XXNRSPPXXXRAXRXXVXVXGRAPXXPXPFPXXXXGSXXXGXLPPXPLXXXXGXXPPPXX 558
RS P R + RA P P P LPP P P
Sbjct: 367 ---RSAPSTGR--QPPPLSSSRAVSNP-PAPPPAIPGRSAPALPPLGNASRTSTPPVPTP 420
Query: 557 KGXPPXFXXP-PPXGPP 510
PP PP PP
Sbjct: 421 PSLPPSAPPSLPPSAPP 437
Score = 27.9 bits (59), Expect = 3.2
Identities = 32/148 (21%), Positives = 33/148 (22%), Gaps = 2/148 (1%)
Frame = -1
Query: 1089 PPPPXGXXXXXPXFPGGGXXXXXXPXXRXVXXXGGAPXGXXXGXXXXGXXXPPRXGXXPX 910
PPPP P G P R G P PP P
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP-----PA 394
Query: 909 XPPPXXFXXXPPRXXAPXGXPXXXAFXGXXPFXXPX-PPRXXXGFSXGXXXPPP-PPXGG 736
P P + P P P PP G PP PP
Sbjct: 395 IPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP 454
Query: 735 XKPXPPXXXPXXXXXXXXXRKSPPXPXP 652
P P P PP P P
Sbjct: 455 IAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect = 0.59
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 925 GXXPXXPPPPXFXGXSPPXPXP 860
G P PPPP G PP P P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPP 780
Score = 29.9 bits (64), Expect = 0.78
Identities = 22/67 (32%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Frame = -1
Query: 906 PPPXXFXXXPPRXXAPXGXPXXXAFXGXXPFXXPXPPRXXXGFSXGXXXPPPPP----XG 739
PPP P AP P G P P PP G G PPPPP G
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPP--PPPPPPGVAG--AGPPPPPPPPPAVSAG 788
Query: 738 GXKPXPP 718
G + P
Sbjct: 789 GSRYYAP 795
Score = 29.5 bits (63), Expect = 1.0
Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = -2
Query: 659 PXPFPXXXXGSXXXGXLP-PXPLXXXXGXXPPPXXKGXPPXFXXPPPXGPP 510
P P P + +P P P G PPP G PPP PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = -1
Query: 759 PPPPPXGGXKPXPPXXXPXXXXXXXXXRKSPPXPXPLSXGXXRF 628
PPP P G P PP P PP P +S G R+
Sbjct: 752 PPPAPIMGGPPPPP---PPPGVAGAGPPPPPPPPPAVSAGGSRY 792
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Frame = -1
Query: 849 PXXXAFXGXXPFXXPXPPRXXXGFSXGXXXPPPPP-XGGXKPXPPXXXP 706
P A P P P G PPPPP G P PP P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -2
Query: 572 PPPXXKGXPPXFXXPPPXGPP 510
PPP PP P P GPP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPP 1728
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/32 (40%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Frame = -2
Query: 932 PXGVXPPXXPPPXXXG--XLPPGPXPXGXXPS 843
P V PP PP G PP P P PS
Sbjct: 1711 PMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.156 0.537
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,085,369
Number of Sequences: 5004
Number of extensions: 29897
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 691537944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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