Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_G13
(1276 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 37 0.007
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 34 0.048
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.34
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 5.5
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 5.5
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 36.7 bits (81), Expect = 0.007
Identities = 27/100 (27%), Positives = 34/100 (34%), Gaps = 4/100 (4%)
Frame = +2
Query: 626 PPPXKXXKNXPPKKXGAXPHGXKKTPXVXPXNXPXXPPXXPPXXXXKXSP-FXP*GKXXX 802
P P + PP + P ++ P + PP PP + +P P G
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASR 411
Query: 803 XQXPP-GXXPXXPGGAPP--PXXGRXQXPPGKPXXXPPXP 913
PP P P APP P P G P PP P
Sbjct: 412 TSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAP-AAPPLP 450
Score = 35.1 bits (77), Expect = 0.021
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Frame = +1
Query: 679 PPRXXKNPGRXPX------KXPPXPPRXPPXXXXKXVPLXPXGKXGPXPKXPXXXPPXXG 840
PP +N G+ P P PP P +PL P G+ P P P P G
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP-PPPPPRSAPSTG 373
Query: 841 GGPPP 855
PPP
Sbjct: 374 RQPPP 378
Score = 31.9 bits (69), Expect = 0.19
Identities = 39/172 (22%), Positives = 46/172 (26%), Gaps = 1/172 (0%)
Frame = +2
Query: 428 PXPXPPPRXPXXPPXXXGKXLPPXPXGEXRXPXKXGKTPKKXX*PXXQKXXXXLKRXDXX 607
P P PPP PP P T K P + +
Sbjct: 253 PPPIPPPSNGTVSSPPNS---PPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKK 309
Query: 608 GXFPRAPPPXKXXKNXPPKKXGAXPHGXKKTPXVXPXNXPXXPPXXPPXXXXKXS-PFXP 784
P PPP + + PP G+ N PP PP S P P
Sbjct: 310 RP-PPPPPPSRRNRGKPPIGNGSS-------------NSSLPPPPPPPRSNAAGSIPLPP 355
Query: 785 *GKXXXXQXPPGXXPXXPGGAPPPXXGRXQXPPGKPXXXPPXPGXXXFWXPP 940
G+ PP P G PP + P P PG PP
Sbjct: 356 QGRSAPPPPPPRSAPST--GRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP 405
Score = 29.5 bits (63), Expect = 1.0
Identities = 24/84 (28%), Positives = 25/84 (29%), Gaps = 4/84 (4%)
Frame = +1
Query: 616 PKGPPPXKXXQKXXPXKXGGXPPRXXKNPGRXPXKXPPXPPRXPPXXXXKXVPLXPXGKX 795
P PPP + G R P P P PP PP P P G
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTP---PSLPPSAPPSLPPSAPPSLPMGAP 444
Query: 796 G--PXPKXPXXXPPXXGGGP--PP 855
P P PP G P PP
Sbjct: 445 AAPPLPPSAPIAPPLPAGMPAAPP 468
Score = 26.2 bits (55), Expect = 9.7
Identities = 24/104 (23%), Positives = 29/104 (27%), Gaps = 6/104 (5%)
Frame = +2
Query: 620 RAPPPXKXXKNXPPKKXGAXPHGXKKTPXVXPXNXPXXP----PXXPPXXXXKXS--PFX 781
R+ PP ++ P P + P P P P PP + P
Sbjct: 358 RSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPV 417
Query: 782 P*GKXXXXQXPPGXXPXXPGGAPPPXXGRXQXPPGKPXXXPPXP 913
P PP P P P PP P PP P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP-IAPPLP 460
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 33.9 bits (74), Expect = 0.048
Identities = 27/70 (38%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Frame = -3
Query: 854 GGGPPPXXGGXFXGXFG-XGPXFPXGXRGTXFXXXXGGXRGGXGGXFXGXRPGF---FXX 687
G G PP G F G G G G G F GG GG GG F G GF
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEGHHHGGHG-GFGGGPGGFEGGPGG-FGGGPGGFGGGLGG 253
Query: 686 RGGXPPXFXG 657
GG P F G
Sbjct: 254 FGGGPGGFGG 263
Score = 32.7 bits (71), Expect = 0.11
Identities = 25/71 (35%), Positives = 25/71 (35%)
Frame = -3
Query: 827 GXFXGXFGXGPXFPXGXRGTXFXXXXGGXRGGXGGXFXGXRPGFFXXRGGXPPXFXGXXF 648
G F G G P P G G G GG GG F G GF GG G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGG-FGGGPGGFEGGPGGFGGGPGGFGG 249
Query: 647 WXXFXGGGPLG 615
GGGP G
Sbjct: 250 GLGGFGGGPGG 260
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.34
Identities = 14/44 (31%), Positives = 16/44 (36%)
Frame = +1
Query: 724 PPXPPRXPPXXXXKXVPLXPXGKXGPXPKXPXXXPPXXGGGPPP 855
PP P P +P+ P P P P G GPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 27.5 bits (58), Expect = 4.2
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 391 PPPPGXXGXXXGXPXPSPP 447
PPPPG G P P PP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 7.3
Identities = 17/56 (30%), Positives = 17/56 (30%)
Frame = +1
Query: 679 PPRXXKNPGRXPXKXPPXPPRXPPXXXXKXVPLXPXGKXGPXPKXPXXXPPXXGGG 846
PP P P P PP P P P G G P P PP G
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPA--PIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 1.4
Identities = 29/141 (20%), Positives = 35/141 (24%)
Frame = +2
Query: 491 PPXPXGEXRXPXKXGKTPKKXX*PXXQKXXXXLKRXDXXGXFPRAPPPXKXXKNXPPKKX 670
PP P G P T + P G P+ K + P
Sbjct: 73 PPVPTGAPSLPTSSNNTQQAEERPSMPALGGLFA-----GGMPKLRHIGKSSASAAPPSA 127
Query: 671 GAXPHGXKKTPXVXPXNXPXXPPXXPPXXXXKXSPFXP*GKXXXXQXPPGXXPXXPGGAP 850
A P + + P P PP P PP P P +P
Sbjct: 128 PAPPTPQSE---LRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184
Query: 851 PPXXGRXQXPPGKPXXXPPXP 913
P P P PP P
Sbjct: 185 PSAPSLPSAVPPMPPKVPPPP 205
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 1.4
Identities = 26/95 (27%), Positives = 28/95 (29%), Gaps = 7/95 (7%)
Frame = +1
Query: 679 PPRXXKNPGRXPXKXPPX--PPRXPPXXXXKXVPLXPXGKXGPXPKXPXXXPP---XXGG 843
PP N P PP PP P P P + P PK PP
Sbjct: 971 PPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSAD 1030
Query: 844 GPP-PXXGXGXXXPX*TXT-XXPXTGXTXXLXPPP 942
PP P P T T P + PPP
Sbjct: 1031 APPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPP 1065
Score = 27.1 bits (57), Expect = 5.5
Identities = 22/83 (26%), Positives = 23/83 (27%), Gaps = 4/83 (4%)
Frame = +1
Query: 616 PKGPPPXKXXQKXXPX--KXGGXPPRXXKNPGRXPXKXPPX--PPRXPPXXXXKXVPLXP 783
P PPP P G PP + G P P PP P VP
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPS-GIPPVPKPSVAAPPVPKPSVAVPPVPAPS 1118
Query: 784 XGKXGPXPKXPXXXPPXXGGGPP 852
P P P G PP
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPP 1141
Score = 27.1 bits (57), Expect = 5.5
Identities = 21/82 (25%), Positives = 24/82 (29%), Gaps = 2/82 (2%)
Frame = +1
Query: 616 PKGPPPXKXXQKXXPX--KXGGXPPRXXKNPGRXPXKXPPXPPRXPPXXXXKXVPLXPXG 789
P G PP P G PP + P P P P+ P
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPS 1195
Query: 790 KXGPXPKXPXXXPPXXGGGPPP 855
+ P PK PP PPP
Sbjct: 1196 EAPPVPKPSVGVPPV----PPP 1213
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 836 PGGAPPPXXGRXQXPPGKPXXXPPXPG 916
PG PPP PP +P PP PG
Sbjct: 6 PGNPPPPPPPPGFEPPSQP-PPPPPPG 31
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +1
Query: 673 GXPPRXXKNPGRXPXKXPPXPPRXPPXXXXK 765
G PP PG P PP PP PP K
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPP--PPGYVKK 35
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.1 bits (57), Expect = 5.5
Identities = 20/54 (37%), Positives = 20/54 (37%)
Frame = -3
Query: 839 PXXGGXFXGXFGXGPXFPXGXRGTXFXXXXGGXRGGXGGXFXGXRPGFFXXRGG 678
P G G G F G G F GG RGG G G R G RGG
Sbjct: 5 PGSRGGRGGSRGGRGGFNGGRGG--FGGGRGGARGGGRGGARGGRGGRGGARGG 56
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.152 0.541
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,923
Number of Sequences: 5004
Number of extensions: 27342
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 693525122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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