Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_G13
         (1276 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    27   1.2  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            25   3.6  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 18/61 (29%), Positives = 18/61 (29%)
 Frame = +1

Query: 673 GXPPRXXKNPGRXPXKXPPXPPRXPPXXXXKXVPLXPXGKXGPXPKXPXXXPPXXGGGPP 852
           G  P     P R P       P  PP          P G   P    P       GGGPP
Sbjct: 288 GGMPSGMVGPPRPPMPMQGGAPGGPPQGMRPNFYNRPMGD--PQTSRPPSGNDNMGGGPP 345

Query: 853 P 855
           P
Sbjct: 346 P 346



 Score = 25.8 bits (54), Expect = 2.7
 Identities = 19/80 (23%), Positives = 22/80 (27%)
 Frame = +1

Query: 616 PKGPPPXKXXQKXXPXKXGGXPPRXXKNPGRXPXKXPPXPPRXPPXXXXKXVPLXPXGKX 795
           P GP   +      P + G         PG    + P  P    P      VP    G  
Sbjct: 186 PPGPQMMRPPGNVGPPRTGTPTQPQPPRPGGMYPQPPGVPMPMRPQMPPGAVPGMQPGMQ 245

Query: 796 GPXPKXPXXXPPXXGGGPPP 855
              P       P   G PPP
Sbjct: 246 PRPPSAQGMQRPPMMGQPPP 265


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = -3

Query: 869 PXPXXGGGPPPXXGGXFXGXFGXGPXFP 786
           P P  G  P P  GG   G  G  P  P
Sbjct: 587 PPPPMGPPPSPLAGGPLGGPAGSRPPLP 614



 Score = 24.2 bits (50), Expect = 8.2
 Identities = 15/49 (30%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
 Frame = +1

Query: 712 PXKXPPXPPRXPPXXXXKXVPLXPXGKXGP-XPKXPXXXPPXXGGGPPP 855
           P   PP  P  PP       PL      GP   + P       GG  PP
Sbjct: 577 PNAQPPPAPPPPPPMGPPPSPLAGGPLGGPAGSRPPLPNLLGFGGAAPP 625


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.316    0.152    0.541 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 648,941
Number of Sequences: 2352
Number of extensions: 10666
Number of successful extensions: 30
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 146331426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)