Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_G12
         (1294 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    24   3.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.9  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 21/71 (29%), Positives = 21/71 (29%)
 Frame = +3

Query: 912  PPPXXXGXXXPXFPXGXGGGXPXXPPPGGXPXXXXXXXXXXXXXXXXXPPPXXPPGGGPX 1091
            PPP       P  P G G      PPP   P                 PPP  PP   P 
Sbjct: 315  PPPSRRNRGKP--PIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP-PPPRSAPS 371

Query: 1092 XGXXXXXGPPP 1124
             G      PPP
Sbjct: 372  TGRQ----PPP 378


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.8 bits (49), Expect(2) = 3.8
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 533 PPPPPPXXXKK 501
           PPPPPP   KK
Sbjct: 25  PPPPPPGYVKK 35



 Score = 21.8 bits (44), Expect(2) = 3.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 551 FXXXXNPPPPPP 516
           F     PPPPPP
Sbjct: 18  FEPPSQPPPPPP 29


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +3

Query: 912 PPPXXXGXXXPXFPXGXGGGXPXXPPP 992
           P P   G   P  P G  G  P  PPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 24.6 bits (51), Expect(2) = 5.1
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 1056 PPPXXPPGGGPXXGXXXXXGPPP 1124
            PPP  PP G    G      PPP
Sbjct: 761  PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 24.2 bits (50), Expect(2) = 3.9
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 1203 PPXXXGGGPPPXP 1241
            PP   G GPPP P
Sbjct: 767  PPGVAGAGPPPPP 779



 Score = 21.4 bits (43), Expect(2) = 3.9
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = +3

Query: 1056 PPPXXPPGGGPXXGXXXXXGPPPG 1127
            P P   P   P  G      PPPG
Sbjct: 746  PAPIPVPPPAPIMGGPPPPPPPPG 769



 Score = 20.6 bits (41), Expect(2) = 5.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 966 GGXPXXPPPGG 998
           GG P  PPP G
Sbjct: 759 GGPPPPPPPPG 769


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 22/70 (31%), Positives = 22/70 (31%)
 Frame = -3

Query: 989 GGXXGXXPPXPXGEXGXXXPXXXRXXXXXXXXXXGXXGGXPXXFXXPXGGAPPXXGGGXF 810
           GG  G  PP P G  G                  G  GG P  F    GG     GG   
Sbjct: 194 GGGSGGPPPGPGGFGGFGG----FGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGG 249

Query: 809 XXXXXGGGPG 780
                GGGPG
Sbjct: 250 GLGGFGGGPG 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,761
Number of Sequences: 5004
Number of extensions: 39061
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 705448190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)