Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_G11
         (1256 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   1.3  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   9.5  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 24/71 (33%), Positives = 33/71 (46%)
 Frame = +3

Query: 240 FCGSPSRASTTYIPTGI*SARCTFSSTTSGV*SIWCSSSTNRLCTKLRSHKHYNTTSYNH 419
           F  SP+ +S+T   +    +  +FSSTTS   S   SSS +   +   S      TS + 
Sbjct: 332 FSSSPTSSSSTISSSSSSPSSSSFSSTTS---SSKSSSSFSSTVSSSSSTSSSTLTSSSS 388

Query: 420 SRSLPRMSSWH 452
           S S P  SS H
Sbjct: 389 SSSRPASSSSH 399


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = +2

Query: 242  LRQSLQGFNHIHTHRHLI---RQVHL-FLHHLRGIVHM 343
            L QSLQ F+H+  H  ++   RQ  L FL HL  I+HM
Sbjct: 1012 LTQSLQSFSHLSNHIEVLDSTRQSRLTFLCHL--ILHM 1047


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,973,218
Number of Sequences: 5004
Number of extensions: 75141
Number of successful extensions: 187
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 681602054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)