Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_G11
         (1256 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54238-6|CAA90999.2|  119|Caenorhabditis elegans Hypothetical pr...    42   7e-04
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr...    30   4.0  
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion...    30   4.0  
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion...    30   4.0  
AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical...    29   9.2  
AC006610-4|AAK85450.1|  246|Caenorhabditis elegans Hypothetical ...    29   9.2  

>Z54238-6|CAA90999.2|  119|Caenorhabditis elegans Hypothetical
           protein T28C6.8 protein.
          Length = 119

 Score = 42.3 bits (95), Expect = 7e-04
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +1

Query: 427 ACPACRVGILEDDFTCLGILCAILFFPLGILCCLALKNRRCSNC 558
           +CPAC    ++  F+   IL AI  FP GI CC+  K   C+ C
Sbjct: 10  SCPACTQKKVKSRFSWRAILYAIFCFPCGIYCCMKRKTYYCTQC 53


>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
            presynaptic activity protein.
          Length = 1409

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
 Frame = -3

Query: 408  WWY---YNVCGSVAWYKACLWRRSTIWTIPRRWWRKRCTWRIRCLWVCMWLKPWRDCRRI 238
            WWY    N+  S      CLWRR        ++  K+C    +C+   M     R    +
Sbjct: 1247 WWYERLVNITYSPKTKILCLWRRHDDKVHMHKFHTKKCRELYQCMKAAMERAAARGKVNV 1306

Query: 237  RRGLLGHSWXLH*TE 193
                LG  + +H TE
Sbjct: 1307 EGRALGGEFPVHDTE 1321


>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
            defective protein3, isoform b protein.
          Length = 1408

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
 Frame = -3

Query: 408  WWY---YNVCGSVAWYKACLWRRSTIWTIPRRWWRKRCTWRIRCLWVCMWLKPWRDCRRI 238
            WWY    N+  S      CLWRR        ++  K+C    +C+   M     R    +
Sbjct: 1247 WWYERLVNITYSPKTKILCLWRRHDDKVHMHKFHTKKCRELYQCMKAAMERAAARGKVNV 1306

Query: 237  RRGLLGHSWXLH*TE 193
                LG  + +H TE
Sbjct: 1307 EGRALGGEFPVHDTE 1321


>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
            defective protein3, isoform a protein.
          Length = 1409

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
 Frame = -3

Query: 408  WWY---YNVCGSVAWYKACLWRRSTIWTIPRRWWRKRCTWRIRCLWVCMWLKPWRDCRRI 238
            WWY    N+  S      CLWRR        ++  K+C    +C+   M     R    +
Sbjct: 1247 WWYERLVNITYSPKTKILCLWRRHDDKVHMHKFHTKKCRELYQCMKAAMERAAARGKVNV 1306

Query: 237  RRGLLGHSWXLH*TE 193
                LG  + +H TE
Sbjct: 1307 EGRALGGEFPVHDTE 1321


>AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.31 protein.
          Length = 1219

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 318 TTSGV*SIWCSSSTNRLCTKLRSHKHYNTTSYNHSRS 428
           T SG+    C+SS +  C  +R H +YN   Y  S+S
Sbjct: 255 TWSGLGDCQCASSNSSDCHWIRLHTNYNKCIYEISKS 291


>AC006610-4|AAK85450.1|  246|Caenorhabditis elegans Hypothetical
           protein C30F12.4 protein.
          Length = 246

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
 Frame = +1

Query: 421 VGA--CPACRVGIL--EDD------FTCLGILCAILFFPLGILCCLALKNRRCSNCGAMF 570
           VGA  CP CR GI+  + D        CL + C  L   L ++C        C  CG  +
Sbjct: 170 VGALVCPKCRKGIIMRKQDRLRKKILMCLAVCCCPLTCCLPLICICCNYVDACGACGKKY 229

Query: 571 G 573
           G
Sbjct: 230 G 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,091,773
Number of Sequences: 27780
Number of extensions: 423752
Number of successful extensions: 1063
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3495543430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)