Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_G10
(1274 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0080 + 587674-588510 34 0.28
01_03_0005 + 11568545-11569119,11569179-11569191 30 0.71
01_01_0083 + 631196-631675 32 1.1
09_04_0258 - 16175258-16176069,16176111-16176414 31 1.5
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 30 4.5
08_02_1403 + 26811020-26811146,26813351-26813609,26814932-26814983 30 4.5
07_03_1136 + 24218601-24218734,24218769-24219906 30 4.5
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 5.9
09_02_0603 - 11150739-11150746,11150791-11151340 24 9.7
>07_01_0080 + 587674-588510
Length = 278
Score = 33.9 bits (74), Expect = 0.28
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 716 PXXGGGGXXXXXXXXXPPPXGGGRXXXXXPPPPXPP 823
P GG G PPP G PPPP PP
Sbjct: 80 PRLGGDGMFRRPPPPPPPPPSSGSPPPPPPPPPPPP 115
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 29.9 bits (64), Expect = 4.5
Identities = 17/45 (37%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Frame = -3
Query: 822 GGXGGGGXXXXXRPPP----XGGGXXXXXXXXXPPPPXXGXKXXG 700
GG GGGG PPP GGG PPP G G
Sbjct: 80 GGGGGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPPPTGGGGGGG 124
Score = 25.8 bits (54), Expect(2) = 0.71
Identities = 11/32 (34%), Positives = 12/32 (37%)
Frame = +3
Query: 693 PXXXXFXXXXXGGGGXXXXXXXXXPPPXGGGG 788
P + GGGG PPP GGG
Sbjct: 70 PPPPSYPSGGGGGGGGGTVMYTSPPPPYSGGG 101
Score = 25.4 bits (53), Expect(2) = 0.71
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 777 GGGGXXXXXPPPPXP 821
GGGG PPPP P
Sbjct: 131 GGGGGAYPTPPPPNP 145
>01_01_0083 + 631196-631675
Length = 159
Score = 31.9 bits (69), Expect = 1.1
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -3
Query: 813 GGGGXXXXXRPPPXGGGXXXXXXXXXPPPP 724
GGGG +PP GGG PPPP
Sbjct: 83 GGGGYIPYYQPPAGGGGGGGGFNYPAPPPP 112
>09_04_0258 - 16175258-16176069,16176111-16176414
Length = 371
Score = 31.5 bits (68), Expect = 1.5
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 540 GGGXRPPXXKXXXGGXXPPPPXGXXXXPXXG 632
GGG PP G PPPP G P G
Sbjct: 218 GGGASPPPLPVRVGASTPPPPHGGAGLPEVG 248
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.9 bits (64), Expect = 4.5
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 764 PPPXGGGRXXXXXPPPPXPP 823
PPP G + PPPP PP
Sbjct: 551 PPPPSGNKPAFSPPPPPPPP 570
>08_02_1403 + 26811020-26811146,26813351-26813609,26814932-26814983
Length = 145
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -2
Query: 631 PXXGXXXXPXGGGGXXPPXXXFXXGGRXPPPXGGXPPP 518
P G P G PP G PPP G PPP
Sbjct: 45 PQSGPYPYPPPSGAVYPPQGYPSSHGVYPPPQGPYPPP 82
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.9 bits (64), Expect = 4.5
Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Frame = -2
Query: 631 PXXGXXXXPXGGGGXXPPXXXFXXGGRXPPP----XGGXPPPXP 512
P G P GGGG PP G PP GG PP P
Sbjct: 92 PGGGGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAP 135
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.5 bits (63), Expect = 5.9
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +3
Query: 513 GXGGGXPPXGGGXRPPXXKXXXGGXXPPPPXGXXXXP 623
G GG P G PP GG PPPP G P
Sbjct: 1193 GGVGGPPTPPGAPAPPMPPGVPGG--PPPPPGGRGLP 1227
Score = 29.1 bits (62), Expect = 7.8
Identities = 27/104 (25%), Positives = 27/104 (25%), Gaps = 7/104 (6%)
Frame = +3
Query: 531 PPXGG--GXRPPXXKXXXGGXXPPPPXG-----XXXXPXXGXXRXXXXXXXPXXXXXXXX 689
PP G G PP G PPPP G P G P
Sbjct: 1089 PPTLGDYGVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGV 1148
Query: 690 PPXXXXFXXXXXGGGGXXXXXXXXXPPPXGGGGXXXXXPPPPXP 821
PP PPP GG PPPP P
Sbjct: 1149 PPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGG---VAPPPPPP 1189
>09_02_0603 - 11150739-11150746,11150791-11151340
Length = 185
Score = 24.2 bits (50), Expect(2) = 9.7
Identities = 9/21 (42%), Positives = 9/21 (42%)
Frame = -2
Query: 787 PPPPXGGGXXXXXXXXXPPPP 725
PPPP G PPPP
Sbjct: 45 PPPPPGSTFVPLPQSGVPPPP 65
Score = 23.0 bits (47), Expect(2) = 9.7
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = -2
Query: 607 PXGGGGXXPPXXXFXXGGRXPPPXGGXPPPXP 512
P G PP F PPP PPP P
Sbjct: 57 PQSGVPPPPPLGSFFV----PPPQSRVPPPPP 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,732,382
Number of Sequences: 37544
Number of extensions: 749007
Number of successful extensions: 4575
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3584
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3957481680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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