Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_G10
         (1274 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    27   0.46 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   9.9  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 26.6 bits (56), Expect = 0.46
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -1

Query: 188 KTTDFLFNSSH*GNESASELFFRFEQQIVEGYTKTLYSR*AIKILSTL-FSRXI*RIPYR 12
           +T D++   S  GN S   +FFRFE+QI     +T      + +LS   F   +  IP R
Sbjct: 174 ETVDYMLEKS--GNFSRLVVFFRFERQIGHHLIQTFAPSTLVVMLSWFSFWLGLDAIPGR 231

Query: 11  V 9
           V
Sbjct: 232 V 232


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = +3

Query: 519 GGGXPPXGGGXRPPXXKXXXGGXXPPPP 602
           GG  PP  G   PP          PP P
Sbjct: 406 GGQLPPSAGAPMPPIPNMSNMSGMPPLP 433



 Score = 23.0 bits (47), Expect = 5.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 559 GGRXPPPXGGXPPPXP 512
           GG+ PP  G   PP P
Sbjct: 406 GGQLPPSAGAPMPPIP 421


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 329 DHYSNILFFFFAK*K 373
           +HY +IL F+F K K
Sbjct: 6   EHYRHILLFYFRKGK 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 296,157
Number of Sequences: 438
Number of extensions: 6059
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43702932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)