Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_G09
         (1238 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             152   7e-39
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   5.5  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   7.3  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   7.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   9.6  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  152 bits (368), Expect = 7e-39
 Identities = 84/118 (71%), Positives = 85/118 (72%), Gaps = 4/118 (3%)
 Frame = +1

Query: 829  EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAXGIHETXYNSIMKC 1008
            EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA GIHET YNSIMKC
Sbjct: 1    EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 60

Query: 1009 DVDIRKXLYANTVWS-GVPHVPGI-XTVCKGIXXLXHXXE--NXILXXXKXXXXWIGG 1170
            DVDIRK LYANTV S G    PGI   + K I  L         I    K    WIGG
Sbjct: 61   DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGG 118


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 433  LRVAPEEHPVLLTEAPLNPKANREKM 510
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 927 WATESFVSNGDDLTVGKFVRLLEGAAGCSGGHLLLEVKSDVAQLL 793
           WAT      G+    G F  +L G    +GG L+L +  ++  LL
Sbjct: 260 WATIYKTEGGNAFFKGAFSNILRG----TGGALVLVLYDEIKNLL 300


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 927 WATESFVSNGDDLTVGKFVRLLEGAAGCSGGHLLLEVKSDVAQLL 793
           WAT      G+    G F  +L G    +GG L+L +  ++  LL
Sbjct: 260 WATIYKTEGGNAFFKGAFSNILRG----TGGALVLVLYDEIKNLL 300


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
 Frame = +3

Query: 663 TP-PRHPASGLSRSRPHRLPHEDPHRARLLVHYH 761
           TP P H   G   S  H  PH     A    H H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQH 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 346,812
Number of Sequences: 438
Number of extensions: 8266
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42262176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)