Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_G08
         (1218 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   175   8e-45
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   175   8e-45
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    44   3e-05
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    33   0.11 

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  175 bits (427), Expect = 8e-45
 Identities = 84/139 (60%), Positives = 101/139 (72%)
 Frame = -2

Query: 608 QAVQVFGRKKTXXXVAYCKRGHGMLXVNGRPLDLVEPRLLQYXXQEPILLLGKEKXXMVD 429
           Q+VQ FG+K     VA+CK G G++ VNG PL LV+P +L+    EPIL+ G +K   VD
Sbjct: 2   QSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVD 61

Query: 428 IRVTVKGGGHVAQVYAIRQAISKAXIXFYQKYVDEASKKXIXDILVXYDRXLLVADPRRC 249
           IRV V GGGHV+Q+YAIRQAISKA + +YQK+VDE SK  +   L+ YDR LLVADPRR 
Sbjct: 62  IRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRM 121

Query: 248 EPKKFGGPGARARYXKXYR 192
           EPKKFGG GARAR  K YR
Sbjct: 122 EPKKFGGHGARARQQKSYR 140


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  175 bits (427), Expect = 8e-45
 Identities = 84/139 (60%), Positives = 101/139 (72%)
 Frame = -2

Query: 608 QAVQVFGRKKTXXXVAYCKRGHGMLXVNGRPLDLVEPRLLQYXXQEPILLLGKEKXXMVD 429
           Q+VQ FG+K     VA+CK G G++ VNG PL LV+P +L+    EPIL+ G +K   VD
Sbjct: 2   QSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVD 61

Query: 428 IRVTVKGGGHVAQVYAIRQAISKAXIXFYQKYVDEASKKXIXDILVXYDRXLLVADPRRC 249
           IRV V GGGHV+Q+YAIRQAISKA + +YQK+VDE SK  +   L+ YDR LLVADPRR 
Sbjct: 62  IRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRM 121

Query: 248 EPKKFGGPGARARYXKXYR 192
           EPKKFGG GARAR  K YR
Sbjct: 122 EPKKFGGHGARARQQKSYR 140


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 44.4 bits (100), Expect = 3e-05
 Identities = 38/128 (29%), Positives = 55/128 (42%)
 Frame = -2

Query: 590 GRKKTXXXVAYCKRGHGMLXVNGRPLDLVEPRLLQYXXQEPILLLGKEKXXMVDIRVTVK 411
           G++K+         G G   VNG P D+   R++ +       L    +    ++  TV 
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMV-HRKHAVYPLAACNRLTNYNVWATVH 70

Query: 410 GGGHVAQVYAIRQAISKAXIXFYQKYVDEASKKXIXDILVXYDRXLLVADPRRCEPKKFG 231
           GGG   Q  A+  AISK+ I      + E S K      V  D   ++ D R+ E KK G
Sbjct: 71  GGGPTGQSGAVHAAISKSLI------LQEPSLKQ-----VIKDTHCVLNDKRKVERKKTG 119

Query: 230 GPGARARY 207
            P AR +Y
Sbjct: 120 QPKARKKY 127


>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +2

Query: 887 ALPSLXLXYLLXELNXPLXTLKSIGHQ 967
           ALPS  L YLL E+  P  T+K+IG Q
Sbjct: 93  ALPSFKLLYLLDEVQKPSMTVKAIGRQ 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,194
Number of Sequences: 5004
Number of extensions: 39776
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 659412242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)