Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_G08
         (1218 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...   194   1e-49
AF410936-1|AAL05561.1|  348|Caenorhabditis elegans ephrin EFN-4 ...    29   6.7  
AF038619-2|AAB92075.2|  348|Caenorhabditis elegans Eph(f)rin pro...    29   6.7  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score =  194 bits (472), Expect = 1e-49
 Identities = 86/139 (61%), Positives = 110/139 (79%)
 Frame = -2

Query: 608 QAVQVFGRKKTXXXVAYCKRGHGMLXVNGRPLDLVEPRLLQYXXQEPILLLGKEKXXMVD 429
           Q+VQ FGRKKT   VA+CK+G G++ VNGRPL+ +EP++L+   QEP+LL+GKE+   VD
Sbjct: 6   QSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDVD 65

Query: 428 IRVTVKGGGHVAQVYAIRQAISKAXIXFYQKYVDEASKKXIXDILVXYDRXLLVADPRRC 249
           IR+ V GGGHVAQ+YA+RQA++KA + +Y KYVDE SK+ + +I   YD+ LLVADPRR 
Sbjct: 66  IRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRR 125

Query: 248 EPKKFGGPGARARYXKXYR 192
           E KKFGGPGARARY K YR
Sbjct: 126 ESKKFGGPGARARYQKSYR 144


>AF410936-1|AAL05561.1|  348|Caenorhabditis elegans ephrin EFN-4
           protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +3

Query: 396 YMTTTLDXHSDVNHXXFFLAEQKDRFLXXVLQQSGLNQVQXAPVYTQHSMTTLAIRNXGG 575
           YMTT+    +  NH  + L E ++  L   +  S  +  + AP   Q    T A     G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207

Query: 576 G 578
           G
Sbjct: 208 G 208


>AF038619-2|AAB92075.2|  348|Caenorhabditis elegans Eph(f)rin
           protein 4 protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +3

Query: 396 YMTTTLDXHSDVNHXXFFLAEQKDRFLXXVLQQSGLNQVQXAPVYTQHSMTTLAIRNXGG 575
           YMTT+    +  NH  + L E ++  L   +  S  +  + AP   Q    T A     G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207

Query: 576 G 578
           G
Sbjct: 208 G 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,560,274
Number of Sequences: 27780
Number of extensions: 237473
Number of successful extensions: 331
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3359895476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)