Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_G07
         (1226 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    31   0.25 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    28   3.0  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    27   5.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   9.3  
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    26   9.3  

>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
 Frame = +2

Query: 731 LLKYLMFTLDKYVEQD--YSVVYFHYGLNSKNKPPLSWLWKAYKAFDRKYKKNLKALYLV 904
           L+K     + K +++D  Y+ V+F +     +   LS   KAY   D    KN+KA+Y++
Sbjct: 40  LIKEAYNHVHKLIQKDERYTAVFFAHDSTVFSYLGLSL--KAYYGMDYYLHKNVKAVYVI 97

Query: 905 HPTNVIRVVWQMLRPAISVKSGRK 976
           H   + +V  + L    S K  RK
Sbjct: 98  HTDWMSKVAIRTLLSIASPKFTRK 121


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +2

Query: 725  DQLLKYLMFTLDKYVEQDYSVVYFHYGLNSKNKPPLSWLWKAYKAFDRKYKKNL 886
            +Q L+ L+  L +    D+     ++G N  + P + W W+A ++FD + +  L
Sbjct: 3097 EQELELLISGLPEIDIDDWKNNTEYHGYNVSS-PQVQWFWRAVRSFDEEERAKL 3149


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = -1

Query: 974 SFRISHLLRASTFAIRHV*RLLGAQDTELSDFSYISCQMPCKLSTTTRE 828
           SF +  L       I ++ RLL     EL  F  + C +PCK     RE
Sbjct: 115 SFHVHGLNIGLADNIVYINRLLEKIKNELESFRCLCCHVPCKNKKLLRE 163


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = -3

Query: 618 SENASSSNPDAAISV*TSGPRANSSSKFSSIVPS 517
           S ++SSS+  +++S  +S   A+SSS  SSI+ S
Sbjct: 242 STSSSSSSTSSSLSSSSSSSTASSSSSSSSIISS 275


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +2

Query: 797 HYGLNSKNKPPLSWLWKAYKAFDRKYKKNLKALYLVH 907
           +YG    N PPL +LW      D  ++       +VH
Sbjct: 92  NYGFQDHNPPPLLFLWAIVMNMDALFQTQPLLTLVVH 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,312,825
Number of Sequences: 5004
Number of extensions: 87560
Number of successful extensions: 212
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 665388788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)