Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_G06
(1321 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 34 0.038
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.47
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 3.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 4.4
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 5.8
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 34.3 bits (75), Expect = 0.038
Identities = 23/65 (35%), Positives = 23/65 (35%)
Frame = +3
Query: 381 GGXGGVXXGLGNRAHPGGRGXXFWGPXXXXXPLFXSXXGPAAXGGGXGXXXGGXPVXXPX 560
GG GG G H GG G GP GP GGG G GG
Sbjct: 205 GGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGG---PGGF 261
Query: 561 GGXPG 575
GG PG
Sbjct: 262 GGGPG 266
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/52 (36%), Positives = 19/52 (36%)
Frame = +3
Query: 381 GGXGGVXXGLGNRAHPGGRGXXFWGPXXXXXPLFXSXXGPAAXGGGXGXXXG 536
GG GG G G GG G GP L GP GGG G G
Sbjct: 221 GGHGGFGGGPGG--FEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.47
Identities = 22/73 (30%), Positives = 23/73 (31%), Gaps = 3/73 (4%)
Frame = -1
Query: 589 PXRFXPGXPPXG--XXTGXPPXXXPXPPPXAAGPXXEXKRGXXXXXGPQNXXPRPPGWAR 416
P R P PP G T PP P P +A P G P PP
Sbjct: 396 PGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPI 455
Query: 415 FPN-PXXTPPXPP 380
P P P PP
Sbjct: 456 APPLPAGMPAAPP 468
Score = 29.5 bits (63), Expect = 1.1
Identities = 26/81 (32%), Positives = 29/81 (35%), Gaps = 9/81 (11%)
Frame = -1
Query: 595 PXPXRFXPGXPPXGXXTGXPPXXXPXPPP--XAAGPXXEXKRGXXXXXGPQNXXPR-PPG 425
P P R G PP G + P PPP AAG +G P PR P
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG---RSAPPPPPPRSAPS 371
Query: 424 WARFPNPXXT------PPXPP 380
R P P + PP PP
Sbjct: 372 TGRQPPPLSSSRAVSNPPAPP 392
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = -2
Query: 618 PXGXRXXPPPPKGF-XPXXPPXXGXPG 541
P G PPPP GF P PP PG
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 3.3
Identities = 20/65 (30%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Frame = -1
Query: 571 GXPPXGXXTGXPPXXXPXPPPXAAGPXXEXKRGXXXXXGPQNXXPRP-PGWARFPNPXXT 395
G PP P P PPP A P + G P P P P P P T
Sbjct: 1177 GIPPVPKPAAGVP---PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPT 1233
Query: 394 PPXPP 380
PP
Sbjct: 1234 AKAPP 1238
Score = 26.6 bits (56), Expect = 7.6
Identities = 21/93 (22%), Positives = 26/93 (27%), Gaps = 1/93 (1%)
Frame = +2
Query: 578 KPXGGGGXXRXPXGXXXLXPXLXXGPPPPVXXPXXXLXXRGXXPRGVXXXXXGVPPLXAX 757
KP P G + PP P + V G+PP+
Sbjct: 1125 KPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKP 1184
Query: 758 RXX-PRXPPVGXPXPXPXFPLXVPPGPXXXXXP 853
P PP P P + VPP P P
Sbjct: 1185 AAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAP 1217
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = -2
Query: 597 PPPPKGFXPXXPPXXGXPGSPXXXXXXPPPXXPARGXXXKGXXXP 463
PPPP P P P PPP P G G P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -1
Query: 574 PGXPPXGXXTGXPPXXXPXPPPXAAG 497
P PP G PP P PP +AG
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = -2
Query: 597 PPPPKGFXPXXPPXXGXPGSPXXXXXXPPPXXPARG 490
P P G P PP G G+ PPP A G
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 26.6 bits (56), Expect = 7.6
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = -2
Query: 594 PPPKGFXPXXPPXXGXPGSPXXXXXXPPPXXPA 496
PPP PP PG PPP PA
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.1 bits (57), Expect = 5.8
Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Frame = -2
Query: 597 PPPPKGFXPXX---PPXXGXPGSPXXXXXXPPPXXP 499
P PP F P PP G PG P PP P
Sbjct: 492 PLPPTTFAPPGVPLPPIPGAPGMPNLNMSQPPMVPP 527
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,142,582
Number of Sequences: 5004
Number of extensions: 25023
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 723332792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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