Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_G04
         (967 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938     29   4.2  
05_04_0077 - 17712043-17712246,17712487-17712522,17712746-177129...    29   5.5  

>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
          Length = 331

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -3

Query: 728 FFXFFFXXNFFPXFFFXXXFXFF 660
           FF FFF   FF  FFF   F FF
Sbjct: 62  FFFFFFFFFFFFFFFFFFFFFFF 84



 Score = 29.5 bits (63), Expect = 4.2
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -3

Query: 728 FFXFFFXXNFFPXFFFXXXFXFF 660
           FF FFF   FF  FFF   F FF
Sbjct: 63  FFFFFFFFFFFFFFFFFFFFFFF 85



 Score = 29.5 bits (63), Expect = 4.2
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -3

Query: 728 FFXFFFXXNFFPXFFFXXXFXFF 660
           FF FFF   FF  FFF   F FF
Sbjct: 64  FFFFFFFFFFFFFFFFFFFFFFF 86


>05_04_0077 -
           17712043-17712246,17712487-17712522,17712746-17712900,
           17713431-17713591,17713950-17714110,17714188-17715657,
           17715704-17715998,17716461-17717737,17717826-17718137,
           17718223-17718356,17718449-17718521,17719994-17720059,
           17720748-17720936
          Length = 1510

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 89  PGXKQSGAPFIPXXXGTTSXXSXFPLAMVSLNHF 190
           P   QSG+P +    G+ S     PL  V  NHF
Sbjct: 128 PALSQSGSPAVLPNHGSASRSPYIPLESVQKNHF 161


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,703,464
Number of Sequences: 37544
Number of extensions: 182242
Number of successful extensions: 444
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2799822860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)