Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_G03
(1289 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 39 0.001
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.021
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.086
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.4
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 28 2.4
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 7.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 9.8
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 39.1 bits (87), Expect = 0.001
Identities = 29/91 (31%), Positives = 29/91 (31%), Gaps = 1/91 (1%)
Frame = -1
Query: 839 GRXXGGXSX-GGGPXXKPPXPXXFXXXXXXGAXGXXXFSXGXPXFXGXPXSPPXGGGNXS 663
G GG GGG PP P F G G G F G P G G
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGG--FGGGPGGFEGGPGGFG 241
Query: 662 PXPKXRGXGXXGGGTGXGPXXXTPXPXGGGG 570
P G G G G G G P GG G
Sbjct: 242 GGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
Score = 36.3 bits (80), Expect = 0.009
Identities = 28/80 (35%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Frame = -3
Query: 1011 GGXXXGPPXSPX--GGXGGXGXPXXXXG--XXXGGPXGGVXXGXTPGXFXXPXXGXPPXT 844
GG GPP P GG GG G G GG GG G PG F G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGG--PGGFGGGPGGFGGGL 251
Query: 843 GGXXFXRXXXGGGAXGKTPP 784
GG GGG G P
Sbjct: 252 GGFGGGPGGFGGGPGGHGGP 271
Score = 26.2 bits (55), Expect = 9.8
Identities = 24/82 (29%), Positives = 24/82 (29%), Gaps = 3/82 (3%)
Frame = -1
Query: 932 GXXGGPXGGFXXGX--PXGFXXXXXGVXPPXLGGRXXGGXS-XGGGPXXKPPXPXXFXXX 762
G GG GGF G P G G GG GGGP P F
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243
Query: 761 XXXGAXGXXXFSXGXPXFXGXP 696
G F G F G P
Sbjct: 244 PGGFGGGLGGFGGGPGGFGGGP 265
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.1 bits (77), Expect = 0.021
Identities = 28/104 (26%), Positives = 31/104 (29%), Gaps = 6/104 (5%)
Frame = +2
Query: 704 PXXXGXPXKXPXXQXPPXG--PXPXXGXXGGVXPXAPPPXXX--LXKXXPPVXGG-QPXX 868
P P P P G P P P APPP PP+ +
Sbjct: 355 PQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTST 414
Query: 869 GXXKXPGVXPXXTPPXGPPXSXPXXXXGXP-XPPXPPXGEXGGP 997
P P PP PP + P G P PP PP P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
Score = 29.1 bits (62), Expect = 1.4
Identities = 24/90 (26%), Positives = 25/90 (27%)
Frame = +1
Query: 829 KXRPPSXGGXTPXXXXKXPXGXPXXNPPXGPPXXPXXXXXRXXXPXXXPLXGXGGXXXXX 1008
K RPP + K P G N PP P R PL G
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP----PRSNAAGSIPLPPQGRSAPPP 363
Query: 1009 PPXXXXPXXGXGAPPPXXGGGGXKXPXXXP 1098
PP P G PPP P P
Sbjct: 364 PPPRSAPSTGR-QPPPLSSSRAVSNPPAPP 392
Score = 29.1 bits (62), Expect = 1.4
Identities = 18/72 (25%), Positives = 20/72 (27%)
Frame = +2
Query: 797 PXAPPPXXXLXKXXPPVXGGQPXXGXXKXPGVXPXXTPPXGPPXSXPXXXXGXPXPPXPP 976
P PPP + PP+ G P P S P G PP PP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLP-----PPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Query: 977 XGEXGGPXXXPP 1012
PP
Sbjct: 366 PRSAPSTGRQPP 377
Score = 28.7 bits (61), Expect = 1.8
Identities = 23/98 (23%), Positives = 28/98 (28%), Gaps = 10/98 (10%)
Frame = +2
Query: 749 PPXGPXPXXGXXGGVX--------PXAPPPXXX--LXKXXPPVXGGQPXXGXXKXPGVXP 898
PP P P G + P PPP + PP+ + P P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Query: 899 XXTPPXGPPXSXPXXXXGXPXPPXPPXGEXGGPXXXPP 1012
+ P PP P P PP P PP
Sbjct: 397 GRSAPALPPLGN-ASRTSTPPVPTPPSLPPSAPPSLPP 433
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/33 (33%), Positives = 11/33 (33%)
Frame = +2
Query: 920 PPXSXPXXXXGXPXPPXPPXGEXGGPXXXPPXG 1018
PP P PP PP G PP G
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG 357
Score = 26.2 bits (55), Expect = 9.8
Identities = 22/79 (27%), Positives = 24/79 (30%), Gaps = 5/79 (6%)
Frame = +2
Query: 797 PXAPPPXXXLXKXXPPVXGGQPXXGXXKXPGVXPXXTPPXGPPXSXP-----XXXXGXPX 961
P PPP PP +P P + PP PP S P
Sbjct: 254 PPIPPPSNGTVSS-PPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPP 312
Query: 962 PPXPPXGEXGGPXXXPPXG 1018
PP PP G PP G
Sbjct: 313 PPPPPSRRNRG---KPPIG 328
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.1 bits (72), Expect = 0.086
Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +2
Query: 905 TPPXGP-PXSXPXXXXGXPXPPXPPXGEXG-GPXXXPP 1012
TP P P P G P PP PP G G GP PP
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 31.1 bits (67), Expect = 0.35
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +1
Query: 571 PPPPXGXGVXFXGPXPVPPP 630
PPPP GV GP P PPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = +2
Query: 905 TPPXGPPXSXPXXXXGXPXPPXPPXGEXGGPXXXPPXGG 1021
+PP PP P P PP GGP PP G
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +3
Query: 1047 PPPXXGGGGXQXPPXXPXXGGXXPGKXPXXXPPP 1148
PPP GG PP P G P P PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGP--PPPPPPPP 783
Score = 27.9 bits (59), Expect = 3.2
Identities = 19/70 (27%), Positives = 21/70 (30%)
Frame = +2
Query: 803 APPPXXXLXKXXPPVXGGQPXXGXXKXPGVXPXXTPPXGPPXSXPXXXXGXPXPPXPPXG 982
+PPP P P G P PP G + P P PP PP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP-----PPPPPPPAV 785
Query: 983 EXGGPXXXPP 1012
GG P
Sbjct: 786 SAGGSRYYAP 795
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +2
Query: 896 PXXTPPXGPPXSXPXXXXGXPXPPXPPXGEXGGPXXXPPXGGXP 1027
P TPP P + P P PP PP P P G P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSA-PTPPPPPMSVPPPPSAPPMPAGPP 1728
Score = 26.6 bits (56), Expect = 7.4
Identities = 16/55 (29%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Frame = +2
Query: 851 GGQPXXGXXKXPGVXPXXT-PPXGPPXSXPXXXXGXPXPPXPPXGEXGGPXXXPP 1012
GG P V P PP + P P PP P G P PP
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 1.4
Identities = 29/102 (28%), Positives = 29/102 (28%), Gaps = 4/102 (3%)
Frame = +2
Query: 734 PXXQXPPXGPXPXXGXXGGVXPXAPPPXXXLXKXXPPVXGGQPXXGXXKXP----GVXPX 901
P P P P P PP PPV P G P GV P
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPA--PSSGIPPVPKPAAGVPPV 1191
Query: 902 XTPPXGPPXSXPXXXXGXPXPPXPPXGEXGGPXXXPPXGGXP 1027
P PP P G PP PP P P G P
Sbjct: 1192 PPPSEAPPVPKPSV--G--VPPVPPPST--APPVPTPSAGLP 1227
Score = 27.1 bits (57), Expect = 5.6
Identities = 26/102 (25%), Positives = 26/102 (25%)
Frame = +2
Query: 722 PXKXPXXQXPPXGPXPXXGXXGGVXPXAPPPXXXLXKXXPPVXGGQPXXGXXKXPGVXPX 901
P P PP P P P PP PPV K P
Sbjct: 1093 PVPKPSVAAPPV-PKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151
Query: 902 XTPPXGPPXSXPXXXXGXPXPPXPPXGEXGGPXXXPPXGGXP 1027
P G P P PP P G P P G P
Sbjct: 1152 VPAPSGAP---PVPKPSVAAPPVPAPSS-GIPPVPKPAAGVP 1189
Score = 26.6 bits (56), Expect = 7.4
Identities = 25/85 (29%), Positives = 26/85 (30%)
Frame = +2
Query: 722 PXKXPXXQXPPXGPXPXXGXXGGVXPXAPPPXXXLXKXXPPVXGGQPXXGXXKXPGVXPX 901
P P PP P P G P A P PPV +P G P V P
Sbjct: 1160 PVPKPSVAAPPV-PAPSSGIPPVPKPAAGVPPVPPPSEAPPVP--KPSVG---VPPVPPP 1213
Query: 902 XTPPXGPPXSXPXXXXGXPXPPXPP 976
T P P S P PP
Sbjct: 1214 STAPPVPTPSAGLPPVPVPTAKAPP 1238
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -2
Query: 1096 GXXGGXXXPPPPXXGGGPXXPXXGXPXXGGXXXRXPPLPXGG 971
G G PPPP GGP G P G R GG
Sbjct: 68 GITEGNAAPPPPGAEGGPGAGFGGFPGAGPGGARTFHFNMGG 109
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 143
Score = 26.6 bits (56), Expect = 7.4
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 1020 PPXGGXXXGPPXSPXGGXGGXG 955
P GG GP P GG GG G
Sbjct: 109 PRIGGGHHGPLHGPHGGFGGRG 130
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/34 (32%), Positives = 12/34 (35%)
Frame = +3
Query: 1047 PPPXXGGGGXQXPPXXPXXGGXXPGKXPXXXPPP 1148
PPP + PP P P P PPP
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,230,026
Number of Sequences: 5004
Number of extensions: 47406
Number of successful extensions: 284
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 703461012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -