Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_G02
(1336 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1136 + 24218601-24218734,24218769-24219906 36 0.096
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 35 0.13
11_06_0188 + 21036465-21036627,21036735-21036883,21037369-210374... 32 0.89
02_05_0686 - 30900748-30902167,30903442-30904742 31 1.6
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 30 4.7
06_01_0178 + 1386981-1387505 30 4.7
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 6.3
03_01_0023 + 198414-198968 29 6.3
01_05_0669 - 24152057-24152110,24152224-24152308,24152401-241524... 29 6.3
08_02_1168 + 24853895-24854216,24854264-24854286,24856102-248561... 29 8.3
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 8.3
02_01_0302 - 2021221-2023305 29 8.3
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 35.5 bits (78), Expect = 0.096
Identities = 36/134 (26%), Positives = 37/134 (27%), Gaps = 6/134 (4%)
Frame = -2
Query: 1107 PPGXGXXPXXGGXXXXSPPXXXPXGGXXXXXPXRXXXXG--PXXPPXXXRGRXPQXRXKK 934
PPG G P G PP GG P G P P G P+
Sbjct: 91 PPGGGGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGG 150
Query: 933 XXGG--XPPPXGGXXGGXXXR--GGXXXXXXPXXKGXXGXPXGGEXRKXXXPAXXXKXXT 766
GG P GG GG R GG P G GG R
Sbjct: 151 GGGGGALARPPGGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGGGGGGGLGG 210
Query: 765 XGGXPGXXXGXXGG 724
GG G GG
Sbjct: 211 GGGEGGAPERVIGG 224
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 35.1 bits (77), Expect = 0.13
Identities = 30/116 (25%), Positives = 31/116 (26%), Gaps = 4/116 (3%)
Frame = -2
Query: 1149 AGXPPKPXXXXXXXPPGXGXXPXXGGXXXXSPPXXXPXGGXXXXXPXRXXXXGP-XXPPX 973
A PP P PP G +PP GG P P PP
Sbjct: 1108 APPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPA 1167
Query: 972 XXRGRXPQXRXKKXXGGXPPP---XGGXXGGXXXRGGXXXXXXPXXKGXXGXPXGG 814
RG P PPP GG G G P G P GG
Sbjct: 1168 GFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGG 1223
>11_06_0188 +
21036465-21036627,21036735-21036883,21037369-21037484,
21037939-21038101
Length = 196
Score = 32.3 bits (70), Expect = 0.89
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = -2
Query: 954 PQXRXKKXXGGXPPPXGGXXGGXXXRGGXXXXXXPXXKGXXGXPXGG 814
PQ + + GG GG GG RGG +G G P GG
Sbjct: 140 PQPKGQSQGGGRGGGRGGGRGGFRGRGGGGFRGRGAPRGRGGPPRGG 186
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.5 bits (68), Expect = 1.6
Identities = 18/59 (30%), Positives = 19/59 (32%)
Frame = -2
Query: 1152 RAGXPPKPXXXXXXXPPGXGXXPXXGGXXXXSPPXXXPXGGXXXXXPXRXXXXGPXXPP 976
+A PP P PP G P SPP P GG P G PP
Sbjct: 333 KAAPPPPPPKGPPPPPPAKGPPPPPP-PKGPSPPPPPPPGGKKGGPPPPPPKGGASRPP 390
Score = 30.7 bits (66), Expect = 2.7
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = +2
Query: 815 PPXGXPXXPXLXGXXXXXXPPLXXXPPXFPPXGG--GXPP 928
PP G P P G PP PP PP GG G PP
Sbjct: 340 PPKGPPPPPPAKG-PPPPPPPKGPSPPPPPPPGGKKGGPP 378
Score = 30.3 bits (65), Expect = 3.6
Identities = 22/84 (26%), Positives = 24/84 (28%)
Frame = -2
Query: 1140 PPKPXXXXXXXPPGXGXXPXXGGXXXXSPPXXXPXGGXXXXXPXRXXXXGPXXPPXXXRG 961
PPKP PP P PP P G P + P PP +G
Sbjct: 318 PPKPAAAAPPPPPPPKAAPPP--PPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKG 375
Query: 960 RXPQXRXKKXXGGXPPPXGGXXGG 889
P K PP G G
Sbjct: 376 -GPPPPPPKGGASRPPAAPGVPTG 398
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 29.9 bits (64), Expect = 4.7
Identities = 18/61 (29%), Positives = 18/61 (29%)
Frame = +2
Query: 725 PPCXPXCXPGXPPXVXXFXXXAGXXXFLXSPPXGXPXXPXLXGXXXXXXPPLXXXPPXFP 904
PPC P P PP PP P P PPL PP P
Sbjct: 1154 PPCQPPLPPSPPPATPPPPPPLSPSLPPPPPPPPLPSGP----PPQPAPPPLPIQPPPIP 1209
Query: 905 P 907
P
Sbjct: 1210 P 1210
>06_01_0178 + 1386981-1387505
Length = 174
Score = 29.9 bits (64), Expect = 4.7
Identities = 23/76 (30%), Positives = 25/76 (32%)
Frame = -2
Query: 927 GGXPPPXGGXXGGXXXRGGXXXXXXPXXKGXXGXPXGGEXRKXXXPAXXXKXXTXGGXPG 748
GG GG GG +GG G G GG+ RK A GG G
Sbjct: 41 GGGGGGGGGGGGGAGGKGGKGGAGGHGGAGGGGGGGGGKGRKGG--AGGHGGAGGGGGGG 98
Query: 747 XXXGXXGGXRKXGPXG 700
G GG G G
Sbjct: 99 GGKGRKGGRGGDGGSG 114
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.5 bits (63), Expect = 6.3
Identities = 23/81 (28%), Positives = 25/81 (30%)
Frame = -1
Query: 580 PPTKPRXRGAPRXQXXPGXGXXXGKRXXPXPPGGXATXGXAGAPXXPXNAXPXTRGXXAX 401
PP P APR PG G P PP G A G G P P RG
Sbjct: 351 PPPPPAAPAAPRPPG-PGPG--------PPPPPGAAGRGGGGPPPPALPGGPRARGPPPF 401
Query: 400 KXAXXPXGXTXXGESRKKPXK 338
K + + K K
Sbjct: 402 KKSPGAAAAAAQADPNKAKLK 422
>03_01_0023 + 198414-198968
Length = 184
Score = 29.5 bits (63), Expect = 6.3
Identities = 19/70 (27%), Positives = 20/70 (28%)
Frame = -2
Query: 927 GGXPPPXGGXXGGXXXRGGXXXXXXPXXKGXXGXPXGGEXRKXXXPAXXXKXXTXGGXPG 748
G P P GG GG GG G GG + GG G
Sbjct: 30 GSCPSPGGGGGGGGGGGGGGGGRGGGGGSGGGSGGGGGSGGGGSGGGGSGGGGSGGGGGG 89
Query: 747 XXXGXXGGXR 718
G GG R
Sbjct: 90 GSGGGGGGGR 99
>01_05_0669 -
24152057-24152110,24152224-24152308,24152401-24152486,
24153129-24154341,24154441-24154529,24154607-24154639,
24154674-24154859,24155290-24155380,24155588-24155622,
24155736-24155817,24155968-24156020,24156404-24156469,
24156752-24156820,24156821-24156984,24157925-24158432,
24158543-24158602
Length = 957
Score = 29.5 bits (63), Expect = 6.3
Identities = 13/46 (28%), Positives = 17/46 (36%)
Frame = +3
Query: 690 GXXPPXGPFFXXPXVPPXVFXGXPPWSXXXPXXXGPXFSXFPPXXG 827
G PP + P PP G P++ P GP + P G
Sbjct: 72 GRGPPPSLYGYAPPQPPPALYGAVPYNYGHPQQPGPPYGAVPYNYG 117
>08_02_1168 +
24853895-24854216,24854264-24854286,24856102-24856181,
24856286-24856369,24856843-24857074
Length = 246
Score = 29.1 bits (62), Expect = 8.3
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = -1
Query: 592 PXKXPPTKPRXRGAPRXQXXPGXGXXXGKRXXPXPPGGXATXGXAGAP 449
P + P + P PR G G+R PP G A+ AG P
Sbjct: 22 PYRIPLSSPHLPFLPRSGRGEGRQRRCGRREARRPPPGAASSAAAGRP 69
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 29.1 bits (62), Expect = 8.3
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +3
Query: 699 PPXGPFFXXPXVPPXVFXGXPPWSXXXPXXXGPXFSXFPP 818
PP P P +PP G P P GP S PP
Sbjct: 284 PPNAPMGMPPRIPPPPVGGTQPPPPPPPLANGPPRSIPPP 323
>02_01_0302 - 2021221-2023305
Length = 694
Score = 29.1 bits (62), Expect = 8.3
Identities = 16/59 (27%), Positives = 18/59 (30%)
Frame = +2
Query: 701 PXGPXFRXPPCXPXCXPGXPPXVXXFXXXAGXXXFLXSPPXGXPXXPXLXGXXXXXXPP 877
P GP F PP C P G +PP G P + G PP
Sbjct: 630 PSGPSFHPPPTPHNCSPPSHGSSTGGGHGGGHPPSTSTPPGGKLPFPPVYGVSYASPPP 688
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,612,838
Number of Sequences: 37544
Number of extensions: 350110
Number of successful extensions: 752
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4190274720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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