Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_G02
         (1336 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    26   2.1  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    26   2.8  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            25   6.5  

>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = -1

Query: 559 RGAPRXQXXPGXGXXXGKRXXPXPPGGXATXGXAGAP 449
           RG       PG     G+R  P  PG   T G  G P
Sbjct: 594 RGYAGEPGRPGASGVPGERGYPGMPGEDGTPGLRGEP 630


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 14/45 (31%), Positives = 15/45 (33%)
 Frame = -1

Query: 586 KXPPTKPRXRGAPRXQXXPGXGXXXGKRXXPXPPGGXATXGXAGA 452
           K PP  P   G    +  PG     G    P  PG     G  GA
Sbjct: 715 KGPPGPPGFNGPKGDKGLPGLAGPAGIPGAPGAPGEMGLRGFEGA 759



 Score = 25.0 bits (52), Expect = 4.9
 Identities = 14/46 (30%), Positives = 16/46 (34%)
 Frame = +3

Query: 441 GXXGAPAXPXVAXPPGGXGXXLXPXXXPXPGXXWXRGAPRXRGFVG 578
           G  G P  P     PG  G    P     PG    +G P  +G  G
Sbjct: 125 GDRGDPGLPGSLGYPGEKGDLGTPGPPGYPGDVGPKGEPGPKGPAG 170



 Score = 25.0 bits (52), Expect = 4.9
 Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
 Frame = +3

Query: 441 GXXGAPAXPXVAXP---PGGXGXXLXPXXXPXPGXXWXRGAPRXRGFVG 578
           G  G P  P    P   PG  G    P     PG    +G P  +G +G
Sbjct: 146 GTPGPPGYPGDVGPKGEPGPKGPAGHPGAPGRPGVDGVKGLPGLKGDIG 194


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +3

Query: 450 GAPAXPXVAXPPGGXGXXLXPXXXPXP 530
           G P  P    PPGG    + P   P P
Sbjct: 525 GGPLGPPPPPPPGGAVLNIPPQFLPPP 551


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 621,142
Number of Sequences: 2352
Number of extensions: 7717
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 153210915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)