Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_G01
(1203 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62857 Cluster: 40S ribosomal protein S28; n=137; Eukar... 80 1e-13
UniRef50_Q10421 Cluster: 40S ribosomal protein S28; n=13; Eukary... 72 3e-11
UniRef50_Q9SR73 Cluster: 40S ribosomal protein S28-1; n=13; Magn... 64 9e-09
UniRef50_P54065 Cluster: 30S ribosomal protein S28e; n=27; Archa... 54 6e-06
UniRef50_UPI0000E1F4D9 Cluster: PREDICTED: similar to ribosomal ... 54 7e-06
UniRef50_Q8TVE7 Cluster: 30S ribosomal protein S28e; n=11; cellu... 54 1e-05
UniRef50_Q57U30 Cluster: 40S ribosomal protein S33, putative; n=... 53 2e-05
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 50 1e-04
UniRef50_Q8SQM2 Cluster: 40S RIBOSOMAL PROTEIN S28; n=1; Encepha... 48 5e-04
UniRef50_Q980Q5 Cluster: 30S ribosomal protein S28e; n=14; Archa... 46 0.003
UniRef50_Q3LVV1 Cluster: Ribosomal protein S28; n=1; Bigelowiell... 44 0.006
UniRef50_Q4WGB8 Cluster: Ribosomal protein S28e; n=9; Fungi/Meta... 44 0.006
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 43 0.018
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 42 0.024
UniRef50_A2VEJ7 Cluster: IP17744p; n=1; Drosophila melanogaster|... 42 0.032
UniRef50_Q5EMS8 Cluster: 40S ribosomal protein S28-like protein;... 42 0.032
UniRef50_P57710 Cluster: 30S ribosomal protein S28e; n=9; Euryar... 42 0.032
UniRef50_A0E074 Cluster: Chromosome undetermined scaffold_71, wh... 39 0.22
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 36 2.8
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 34 6.4
UniRef50_Q3V3R3 Cluster: 16 days neonate cerebellum cDNA, RIKEN ... 34 8.4
>UniRef50_P62857 Cluster: 40S ribosomal protein S28; n=137;
Eukaryota|Rep: 40S ribosomal protein S28 - Homo sapiens
(Human)
Length = 69
Score = 79.8 bits (188), Expect = 1e-13
Identities = 39/62 (62%), Positives = 43/62 (69%)
Frame = -3
Query: 424 PHVFARXVKVXGRTGFQGXCXQVKVEFIGXTXRQIIRXVKGPVRDGDILXXFEXEREARX 245
P AR KV GRTG QG C QV+VEF+ T R IIR VKGPVR+GD+L E EREAR
Sbjct: 8 PIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARR 67
Query: 244 LR 239
LR
Sbjct: 68 LR 69
>UniRef50_Q10421 Cluster: 40S ribosomal protein S28; n=13;
Eukaryota|Rep: 40S ribosomal protein S28 -
Schizosaccharomyces pombe (Fission yeast)
Length = 68
Score = 71.7 bits (168), Expect = 3e-11
Identities = 36/62 (58%), Positives = 42/62 (67%)
Frame = -3
Query: 424 PHVFARXVKVXGRTGFQGXCXQVKVEFIGXTXRQIIRXVKGPVRDGDILXXFEXEREARX 245
P A+ +KV GRTG +G QV+VEF+ T R IIR VKGPVR+ DIL E EREAR
Sbjct: 7 PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDILVLLESEREARR 66
Query: 244 LR 239
LR
Sbjct: 67 LR 68
>UniRef50_Q9SR73 Cluster: 40S ribosomal protein S28-1; n=13;
Magnoliophyta|Rep: 40S ribosomal protein S28-1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 64
Score = 63.7 bits (148), Expect = 9e-09
Identities = 36/65 (55%), Positives = 42/65 (64%)
Frame = -3
Query: 433 MDXPHVFARXVKVXGRTGFQGXCXQVKVEFIGXTXRQIIRXVKGPVRDGDILXXFEXERE 254
MD A VKV GRTG +G QV+V+F + R I+R VKGPVR+GDIL E ERE
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTD-SDRYIMRNVKGPVREGDILTLLESERE 59
Query: 253 ARXLR 239
AR LR
Sbjct: 60 ARRLR 64
>UniRef50_P54065 Cluster: 30S ribosomal protein S28e; n=27;
Archaea|Rep: 30S ribosomal protein S28e - Methanococcus
jannaschii
Length = 75
Score = 54.4 bits (125), Expect = 6e-06
Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Frame = -3
Query: 418 VFARXVKVXGRTGFQGXCXQVKVEFIGX--TXRQIIRXVKGPVRDGDILXXFEXEREARX 245
V A ++V GRTG G QV+ + +G T R ++R VKGPV+ GDI+ E EREAR
Sbjct: 11 VAAEVIEVIGRTGVTGGIIQVRCKILGGKDTGRVLVRNVKGPVKVGDIIMLRETEREARP 70
Query: 244 L 242
L
Sbjct: 71 L 71
>UniRef50_UPI0000E1F4D9 Cluster: PREDICTED: similar to ribosomal
protein S28; n=2; Catarrhini|Rep: PREDICTED: similar to
ribosomal protein S28 - Pan troglodytes
Length = 356
Score = 54.0 bits (124), Expect = 7e-06
Identities = 26/43 (60%), Positives = 29/43 (67%)
Frame = -3
Query: 424 PHVFARXVKVXGRTGFQGXCXQVKVEFIGXTXRQIIRXVKGPV 296
P AR KV GRTG QG C QV+V+F+ T R IIR VKGPV
Sbjct: 8 PIKLARVTKVLGRTGSQGQCTQVRVKFMDDTSRSIIRNVKGPV 50
>UniRef50_Q8TVE7 Cluster: 30S ribosomal protein S28e; n=11; cellular
organisms|Rep: 30S ribosomal protein S28e - Methanopyrus
kandleri
Length = 74
Score = 53.6 bits (123), Expect = 1e-05
Identities = 31/59 (52%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = -3
Query: 412 ARXVKVXGRTGFQGXCXQVKVEFI-GXTXRQII-RXVKGPVRDGDILXXFEXEREARXL 242
A V++ GRTG G QVKV + G +II R VKGPVR+GDIL E EREAR +
Sbjct: 15 AEVVEILGRTGMAGEVTQVKVRILEGPDKGRIITRNVKGPVREGDILLLRETEREARPI 73
>UniRef50_Q57U30 Cluster: 40S ribosomal protein S33, putative; n=1;
Trypanosoma brucei|Rep: 40S ribosomal protein S33,
putative - Trypanosoma brucei
Length = 103
Score = 52.8 bits (121), Expect = 2e-05
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Frame = -3
Query: 403 VKVXGRTGFQGXCXQVKVEFIGX-----TXRQIIRXVKGPVRDGDILXXFEXEREARXLR 239
+KV GRTG +G QV+V + R I+R VKGP ++GD+L E EREAR LR
Sbjct: 44 IKVLGRTGSRGNVTQVRVRLMAEEGSPEANRTIVRNVKGPCKEGDMLSLMETEREARRLR 103
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 50.0 bits (114), Expect = 1e-04
Identities = 25/30 (83%), Positives = 25/30 (83%)
Frame = +2
Query: 824 VVRLXXAVSAHSKXVIRLSTXSGDNAGXNM 913
VVRL AVSAHSK VIRLST SGDNAG NM
Sbjct: 30 VVRLRRAVSAHSKAVIRLSTESGDNAGKNM 59
>UniRef50_Q8SQM2 Cluster: 40S RIBOSOMAL PROTEIN S28; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S28
- Encephalitozoon cuniculi
Length = 65
Score = 48.0 bits (109), Expect = 5e-04
Identities = 28/59 (47%), Positives = 31/59 (52%)
Frame = -3
Query: 415 FARXVKVXGRTGFQGXCXQVKVEFIGXTXRQIIRXVKGPVRDGDILXXFEXEREARXLR 239
F V GRTG G QVK+E + R I R VKGPV GDI+ E ERE R R
Sbjct: 8 FGEVTHVLGRTGGSGLLTQVKMELM-HNKRTIQRAVKGPVAVGDIIEILECEREHRRTR 65
>UniRef50_Q980Q5 Cluster: 30S ribosomal protein S28e; n=14;
Archaea|Rep: 30S ribosomal protein S28e - Sulfolobus
solfataricus
Length = 83
Score = 45.6 bits (103), Expect = 0.003
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = -3
Query: 412 ARXVKVXGRTGFQGXCXQVKVEFI-GXTXRQII-RXVKGPVRDGDILXXFEXEREARXL 242
A +++ RTG G QV+V + G +I+ R VKGPVR GDIL E EREAR +
Sbjct: 21 AEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRVGDILILRETEREARKI 79
>UniRef50_Q3LVV1 Cluster: Ribosomal protein S28; n=1; Bigelowiella
natans|Rep: Ribosomal protein S28 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 65
Score = 44.4 bits (100), Expect = 0.006
Identities = 23/55 (41%), Positives = 32/55 (58%)
Frame = -3
Query: 415 FARXVKVXGRTGFQGXCXQVKVEFIGXTXRQIIRXVKGPVRDGDILXXFEXEREA 251
F K+ + G +G QV+V+ I + +IR +KGPVR GDI+ E EREA
Sbjct: 10 FVIVTKILKKVGKRGQGTQVRVKSITNIKKTLIRNIKGPVRIGDIVLLKESEREA 64
>UniRef50_Q4WGB8 Cluster: Ribosomal protein S28e; n=9; Fungi/Metazoa
group|Rep: Ribosomal protein S28e - Aspergillus
fumigatus (Sartorya fumigata)
Length = 56
Score = 44.4 bits (100), Expect = 0.006
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = -3
Query: 424 PHVFARXVKVXGRTGFQGXCXQVKVEFIGXTXRQIIRXVKGP 299
P + +V GRTG +G QV+VEF+ T R IIR VKGP
Sbjct: 7 PVKLVKVTRVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGP 48
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 42.7 bits (96), Expect = 0.018
Identities = 19/33 (57%), Positives = 22/33 (66%)
Frame = +3
Query: 759 RGKAVCVLGALPXPRSXTRCXRSFGXGERYQLT 857
R +C G +P PRS TR RSFG GERY+LT
Sbjct: 26 RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 42.3 bits (95), Expect = 0.024
Identities = 26/57 (45%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 735 CINXSANXRGKAVCVLGALPXPRSXTRCXRSFGXGERYQL-TQRX*YGYPXNQGITQ 902
CI A R +AV VL ALP RS TRC RS G G + YG P QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322
>UniRef50_A2VEJ7 Cluster: IP17744p; n=1; Drosophila
melanogaster|Rep: IP17744p - Drosophila melanogaster
(Fruit fly)
Length = 73
Score = 41.9 bits (94), Expect = 0.032
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = -3
Query: 412 ARXVKVXGRTGFQGXCXQVKVEFIGXTXRQIIRXVKGPVRDGDI 281
AR +K+ R G +G +V+V+ + Q +R VKGPVR GD+
Sbjct: 7 ARVIKILNRIGARGILTEVRVQLVDQPKMQFMRTVKGPVRLGDV 50
>UniRef50_Q5EMS8 Cluster: 40S ribosomal protein S28-like protein;
n=2; Sordariomycetes|Rep: 40S ribosomal protein S28-like
protein - Magnaporthe grisea (Rice blast fungus)
(Pyricularia grisea)
Length = 85
Score = 41.9 bits (94), Expect = 0.032
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = -3
Query: 424 PHVFARXVKVXGRTGFQGXCXQVKVEFIGXTXRQIIRXVKGP 299
P + +V GRTG +G QV+VEF+ R IIR VKGP
Sbjct: 7 PVKLVKVTRVLGRTGSRGGVTQVRVEFMDDQSRSIIRNVKGP 48
>UniRef50_P57710 Cluster: 30S ribosomal protein S28e; n=9;
Euryarchaeota|Rep: 30S ribosomal protein S28e -
Halobacterium salinarium (Halobacterium halobium)
Length = 74
Score = 41.9 bits (94), Expect = 0.032
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -3
Query: 412 ARXVKVXGRTGFQGXCXQVK--VEFIGXTXRQIIRXVKGPVRDGDILXXFEXEREA 251
A ++V G+TG G QVK ++ G R I R V GPVR GD++ E REA
Sbjct: 13 AEVIEVVGKTGMHGEAMQVKCRIQEGGNQGRIITRNVLGPVRVGDVIQLKETAREA 68
>UniRef50_A0E074 Cluster: Chromosome undetermined scaffold_71, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_71,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 321
Score = 39.1 bits (87), Expect = 0.22
Identities = 19/30 (63%), Positives = 20/30 (66%)
Frame = -3
Query: 328 RQIIRXVKGPVRDGDILXXFEXEREARXLR 239
R +IR V GPVR GD L E EREAR LR
Sbjct: 292 RTLIRNVMGPVRKGDTLELMECEREARRLR 321
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 35.5 bits (78), Expect = 2.8
Identities = 24/61 (39%), Positives = 25/61 (40%)
Frame = -2
Query: 992 QGAEPYGKTPXTRPFYGXXPFXGLLXTCXFLRYPLIXWITVXXXXXXXXXXXXAERPXAA 813
+GAEP K R P L TC F YPLI WITV ERP A
Sbjct: 4 RGAEPMEK----RLRCWLLPVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERPSVA 59
Query: 812 S 810
S
Sbjct: 60 S 60
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 34.3 bits (75), Expect = 6.4
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +1
Query: 538 DPXMIXYXDELGQTTTKMQ 594
DP MI Y DE GQTTT+MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_Q3V3R3 Cluster: 16 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:9630014M24
product:hypothetical protein, full insert sequence; n=2;
Mus musculus|Rep: 16 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:9630014M24
product:hypothetical protein, full insert sequence - Mus
musculus (Mouse)
Length = 148
Score = 33.9 bits (74), Expect = 8.4
Identities = 20/43 (46%), Positives = 23/43 (53%)
Frame = +3
Query: 285 SPSRTGPFTXLMI*RXVXPMNSTFT*XHXP*KPVRPXTFTXRA 413
SP RTGP T M R V ++ST T H P +PV P T A
Sbjct: 84 SPFRTGPLTFQMKERLVSFIDSTPTCAHCPCEPVLPSTLVTLA 126
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 626,893,652
Number of Sequences: 1657284
Number of extensions: 7313906
Number of successful extensions: 8987
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 6690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8861
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 121165024814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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