Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_G01
         (1203 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein S28|Schizosa...    72   2e-13
SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein S28|Sc...    72   2e-13

>SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 68

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 36/62 (58%), Positives = 42/62 (67%)
 Frame = -3

Query: 424 PHVFARXVKVXGRTGFQGXCXQVKVEFIGXTXRQIIRXVKGPVRDGDILXXFEXEREARX 245
           P   A+ +KV GRTG +G   QV+VEF+  T R IIR VKGPVR+ DIL   E EREAR 
Sbjct: 7   PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDILVLLESEREARR 66

Query: 244 LR 239
           LR
Sbjct: 67  LR 68


>SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 68

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 36/62 (58%), Positives = 42/62 (67%)
 Frame = -3

Query: 424 PHVFARXVKVXGRTGFQGXCXQVKVEFIGXTXRQIIRXVKGPVRDGDILXXFEXEREARX 245
           P   A+ +KV GRTG +G   QV+VEF+  T R IIR VKGPVR+ DIL   E EREAR 
Sbjct: 7   PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDILVLLESEREARR 66

Query: 244 LR 239
           LR
Sbjct: 67  LR 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,637
Number of Sequences: 5004
Number of extensions: 27240
Number of successful extensions: 19
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 649451332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)