Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_G01
         (1203 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058...    34   0.19 
03_01_0468 - 3612079-3612197,3612679-3612850                           29   7.3  

>10_07_0172 +
           13804803-13805293,13805423-13805537,13805766-13805831,
           13805921-13806009,13806103-13806193,13806312-13806458,
           13806575-13806667,13806745-13806846,13806957-13807541,
           13808523-13808813,13808866-13808937
          Length = 713

 Score = 34.3 bits (75), Expect = 0.19
 Identities = 21/65 (32%), Positives = 26/65 (40%)
 Frame = +2

Query: 239 SQPPSFTFXFKXXEDVXVTDRSFHVPDDLTXGXPNELXLHLXTXALKTSTAXYFHXTSKN 418
           +QPP      +  EDV +TDR+  VP D T     EL   L         A + H   K 
Sbjct: 605 AQPPGLPLRLEQGEDVALTDRALDVPHDETVLVVEELHSDLGHLTPGAGAAHHLHHDGKF 664

Query: 419 VGXIH 433
              IH
Sbjct: 665 DLGIH 669


>03_01_0468 - 3612079-3612197,3612679-3612850
          Length = 96

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 239 SQPPSFTFXFKXXEDVXVTDRSFHVPDDLTXGXPNELXLHL 361
           ++PP      +  EDV +++R+  VP D T     EL  HL
Sbjct: 10  AKPPGLPLGLEQGEDVALSNRALDVPHDETVLVIQELDSHL 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,031,050
Number of Sequences: 37544
Number of extensions: 221705
Number of successful extensions: 262
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3678130032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)