Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_G01
         (1203 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58682-1|AAB07066.1|   69|Homo sapiens ribosomal protein S28 pro...    80   2e-14
L05091-1|AAC15855.1|   69|Homo sapiens ribosomal protein S28 pro...    80   2e-14
CR457055-1|CAG33336.1|   69|Homo sapiens RPS28 protein.                80   2e-14
BC070218-1|AAH70218.1|   69|Homo sapiens ribosomal protein S28 p...    80   2e-14
BC070217-1|AAH70217.1|   69|Homo sapiens ribosomal protein S28 p...    80   2e-14
BC021239-1|AAH21239.1|   69|Homo sapiens ribosomal protein S28 p...    80   2e-14
BC000354-1|AAH00354.1|   69|Homo sapiens ribosomal protein S28 p...    80   2e-14
AB061846-1|BAB79484.1|   69|Homo sapiens ribosomal protein S28 p...    80   2e-14

>U58682-1|AAB07066.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 79.8 bits (188), Expect = 2e-14
 Identities = 39/62 (62%), Positives = 43/62 (69%)
 Frame = -3

Query: 424 PHVFARXVKVXGRTGFQGXCXQVKVEFIGXTXRQIIRXVKGPVRDGDILXXFEXEREARX 245
           P   AR  KV GRTG QG C QV+VEF+  T R IIR VKGPVR+GD+L   E EREAR 
Sbjct: 8   PIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARR 67

Query: 244 LR 239
           LR
Sbjct: 68  LR 69


>L05091-1|AAC15855.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 79.8 bits (188), Expect = 2e-14
 Identities = 39/62 (62%), Positives = 43/62 (69%)
 Frame = -3

Query: 424 PHVFARXVKVXGRTGFQGXCXQVKVEFIGXTXRQIIRXVKGPVRDGDILXXFEXEREARX 245
           P   AR  KV GRTG QG C QV+VEF+  T R IIR VKGPVR+GD+L   E EREAR 
Sbjct: 8   PIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARR 67

Query: 244 LR 239
           LR
Sbjct: 68  LR 69


>CR457055-1|CAG33336.1|   69|Homo sapiens RPS28 protein.
          Length = 69

 Score = 79.8 bits (188), Expect = 2e-14
 Identities = 39/62 (62%), Positives = 43/62 (69%)
 Frame = -3

Query: 424 PHVFARXVKVXGRTGFQGXCXQVKVEFIGXTXRQIIRXVKGPVRDGDILXXFEXEREARX 245
           P   AR  KV GRTG QG C QV+VEF+  T R IIR VKGPVR+GD+L   E EREAR 
Sbjct: 8   PIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARR 67

Query: 244 LR 239
           LR
Sbjct: 68  LR 69


>BC070218-1|AAH70218.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 79.8 bits (188), Expect = 2e-14
 Identities = 39/62 (62%), Positives = 43/62 (69%)
 Frame = -3

Query: 424 PHVFARXVKVXGRTGFQGXCXQVKVEFIGXTXRQIIRXVKGPVRDGDILXXFEXEREARX 245
           P   AR  KV GRTG QG C QV+VEF+  T R IIR VKGPVR+GD+L   E EREAR 
Sbjct: 8   PIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARR 67

Query: 244 LR 239
           LR
Sbjct: 68  LR 69


>BC070217-1|AAH70217.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 79.8 bits (188), Expect = 2e-14
 Identities = 39/62 (62%), Positives = 43/62 (69%)
 Frame = -3

Query: 424 PHVFARXVKVXGRTGFQGXCXQVKVEFIGXTXRQIIRXVKGPVRDGDILXXFEXEREARX 245
           P   AR  KV GRTG QG C QV+VEF+  T R IIR VKGPVR+GD+L   E EREAR 
Sbjct: 8   PIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARR 67

Query: 244 LR 239
           LR
Sbjct: 68  LR 69


>BC021239-1|AAH21239.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 79.8 bits (188), Expect = 2e-14
 Identities = 39/62 (62%), Positives = 43/62 (69%)
 Frame = -3

Query: 424 PHVFARXVKVXGRTGFQGXCXQVKVEFIGXTXRQIIRXVKGPVRDGDILXXFEXEREARX 245
           P   AR  KV GRTG QG C QV+VEF+  T R IIR VKGPVR+GD+L   E EREAR 
Sbjct: 8   PIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARR 67

Query: 244 LR 239
           LR
Sbjct: 68  LR 69


>BC000354-1|AAH00354.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 79.8 bits (188), Expect = 2e-14
 Identities = 39/62 (62%), Positives = 43/62 (69%)
 Frame = -3

Query: 424 PHVFARXVKVXGRTGFQGXCXQVKVEFIGXTXRQIIRXVKGPVRDGDILXXFEXEREARX 245
           P   AR  KV GRTG QG C QV+VEF+  T R IIR VKGPVR+GD+L   E EREAR 
Sbjct: 8   PIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARR 67

Query: 244 LR 239
           LR
Sbjct: 68  LR 69


>AB061846-1|BAB79484.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 79.8 bits (188), Expect = 2e-14
 Identities = 39/62 (62%), Positives = 43/62 (69%)
 Frame = -3

Query: 424 PHVFARXVKVXGRTGFQGXCXQVKVEFIGXTXRQIIRXVKGPVRDGDILXXFEXEREARX 245
           P   AR  KV GRTG QG C QV+VEF+  T R IIR VKGPVR+GD+L   E EREAR 
Sbjct: 8   PIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARR 67

Query: 244 LR 239
           LR
Sbjct: 68  LR 69


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,537,775
Number of Sequences: 237096
Number of extensions: 1253832
Number of successful extensions: 1578
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1565
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 16954238840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)