Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_F23
(1176 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0138 + 17093196-17093325,17095704-17095804,17096224-170962... 106 3e-23
01_01_0078 + 587975-588179,588506-588606,589087-589167,589240-59... 87 2e-17
05_01_0142 - 940421-940701,941262-941574 34 0.25
11_06_0497 + 24337772-24337993,24338042-24338083,24338176-24339357 31 1.3
02_05_0970 - 33179180-33179210,33179297-33179441,33180307-331803... 31 2.3
07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439 30 4.1
11_06_0418 - 23317077-23317343,23317614-23317787,23317886-233179... 29 5.4
12_01_0383 - 3006974-3007200,3007808-3007985,3008398-3008478,300... 29 9.4
03_05_1050 - 29966031-29966076,29966180-29966232,29966420-299668... 29 9.4
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 29 9.4
>06_03_0138 +
17093196-17093325,17095704-17095804,17096224-17096292,
17096403-17097650,17097763-17097871,17099459-17099655,
17099732-17099842,17099927-17100079
Length = 705
Score = 106 bits (255), Expect = 3e-23
Identities = 62/139 (44%), Positives = 85/139 (61%), Gaps = 13/139 (9%)
Frame = +1
Query: 220 LGSKISLISKADIRYEGRLFTVDPQECTIALASVRSFGTEDRETQYPVAPQS-QVYDYIL 396
+GS ISL SK++IRYEG L+T++ +E +I L +VRSFGTE R+ P S ++Y+YIL
Sbjct: 11 IGSVISLTSKSEIRYEGVLYTINTEESSIGLRNVRSFGTEGRKKDGQQIPASDKIYEYIL 70
Query: 397 FRGSDIKDIRVLNNVPSMP----NDPAIMQ--------MSVPPTLGTGPAPGQYVGQFNH 540
FRGSDIKD++V ++ P+ P NDPAI+Q S+PP T P + GQ
Sbjct: 71 FRGSDIKDLQVKSSPPAQPTTLHNDPAIIQSHYPCPASTSLPPPASTAADPASHNGQSG- 129
Query: 541 PVVGQTPYPQYHPMAGFPS 597
+ P PQ+ P A PS
Sbjct: 130 -IQMPPPLPQFQPGASLPS 147
>01_01_0078 +
587975-588179,588506-588606,589087-589167,589240-590178,
590388-590542,590837-590902,590963-591023,591659-591853,
591939-592049,592116-592280
Length = 692
Score = 87.4 bits (207), Expect = 2e-17
Identities = 48/94 (51%), Positives = 65/94 (69%), Gaps = 9/94 (9%)
Frame = +1
Query: 220 LGSKISLISKADIRYEGRLFTVDPQECTIALASVRSFGTEDRETQYPVAPQS-QVYDYIL 396
+GS ISL SK++IRYEG L+ ++ +E +I L +VRSFGTE R+ P S +VY+YIL
Sbjct: 36 IGSLISLTSKSEIRYEGILYNINTEESSIGLRNVRSFGTEGRKKDGVQIPASTKVYEYIL 95
Query: 397 FRGSDIKDIRVLNNVPSMP--------NDPAIMQ 474
FRGSDIKD++V ++ P P NDPAI+Q
Sbjct: 96 FRGSDIKDLQVKSSPPPPPPPQPAAPHNDPAIIQ 129
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 33.9 bits (74), Expect = 0.25
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Frame = +1
Query: 484 PPTLGTGPAPGQYVGQFNHPVVGQTP----YPQY--HPMAGFPSGVHNQLNKTSS----M 633
PP P PG Y Q +P G P YPQ+ +P AG+P +Q SS M
Sbjct: 56 PPPGAYPPPPGAYPPQHGYPQPGGYPPPGGYPQHGGYPPAGYPGSSGHQGGHGSSGGGHM 115
Query: 634 LDLIGGGSQQNASRSGTPAVGVH 702
++ GG+ A+ G + H
Sbjct: 116 GAMLAGGAAAAAAAYGAHKISSH 138
>11_06_0497 + 24337772-24337993,24338042-24338083,24338176-24339357
Length = 481
Score = 31.5 bits (68), Expect = 1.3
Identities = 23/107 (21%), Positives = 40/107 (37%)
Frame = +1
Query: 382 YDYILFRGSDIKDIRVLNNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTP 561
+ +I + D D + + ++ +VP L GP+ VG FN+ V
Sbjct: 163 FGFITYDSEDAVDKALFKTFHELNGKMVEVKRAVPKELSPGPSMRSPVGGFNYAVNRANN 222
Query: 562 YPQYHPMAGFPSGVHNQLNKTSSMLDLIGGGSQQNASRSGTPAVGVH 702
+ + PS V + + L+ GG S G VG++
Sbjct: 223 FLNGYTQGYNPSPVGGYGMRMDARFGLLSGGRSSYPSFGGGYGVGMN 269
>02_05_0970 -
33179180-33179210,33179297-33179441,33180307-33180362,
33180650-33180691,33180814-33180866,33181059-33181490,
33181630-33181707,33181785-33181870,33183588-33183689,
33183754-33183960,33184976-33185336,33185463-33185626,
33185709-33185817,33186468-33186485
Length = 627
Score = 30.7 bits (66), Expect = 2.3
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +1
Query: 595 SGVHNQLNKTSSMLDLIGGGSQQNASRSGTPAVGVHR 705
SG+HN ++ + +M ++ G SQ+NA+ SG P+ GV +
Sbjct: 42 SGLHN-MHGSLNMPNMPGSFSQRNAAMSGLPSSGVQQ 77
>07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439
Length = 1093
Score = 29.9 bits (64), Expect = 4.1
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +1
Query: 214 PELGSKISLISKADIRYEGRLFTVDPQECTIALASVRSFGTEDRETQYPVAPQSQVY 384
P S SL++ D + R+F D ++ + AL ++ + E R +YPVA +V+
Sbjct: 96 PSFRSDGSLLAVGDKKGVVRVFRADKKQSSGALRTLTAHTAETRVVRYPVAGGDKVH 152
>11_06_0418 -
23317077-23317343,23317614-23317787,23317886-23317971,
23318125-23318244,23318338-23318368,23318457-23318532,
23318672-23318759,23318877-23318938,23319041-23319117,
23319890-23319992,23320237-23320298,23321116-23321289,
23322160-23322405
Length = 521
Score = 29.5 bits (63), Expect = 5.4
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 487 PTLGTGPAPGQYVGQFNHPVVGQTPYP 567
PTL T APG Y N + PYP
Sbjct: 32 PTLSTPHAPGPYTSSTNAEAIATQPYP 58
>12_01_0383 -
3006974-3007200,3007808-3007985,3008398-3008478,
3008583-3008822
Length = 241
Score = 28.7 bits (61), Expect = 9.4
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +1
Query: 484 PPTLGTGPAPGQYVGQFNH-PVVGQTPYPQYHPMAGFPSGVHNQLNKTSSMLDLIGGGSQ 660
PPT PA Y Q + PV GQ Y AG+P ++ + L+ GG+
Sbjct: 62 PPTAAASPA--SYHNQLHRVPVCGQV-LVAYGGAAGWPFTPYSSPAQWQVAAGLVNGGAV 118
Query: 661 QNASRSGTP 687
+ R G+P
Sbjct: 119 DHRRRLGSP 127
>03_05_1050 -
29966031-29966076,29966180-29966232,29966420-29966845,
29966983-29967060,29967135-29967220,29969054-29969155,
29969221-29969427,29970528-29970885,29971011-29971174,
29971258-29971366,29971595-29971600
Length = 544
Score = 28.7 bits (61), Expect = 9.4
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = +1
Query: 577 PMAGFPSGVHNQLNKTSSMLDLIGGGSQQNASRSGTPAVGVHR 705
P A SG+HN ++ ++ ++ G +Q+NA+ SG P+ GV +
Sbjct: 32 PGAFHHSGLHN-IHANFNLPNMPGSLAQRNAAMSGLPSSGVQQ 73
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 28.7 bits (61), Expect = 9.4
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +3
Query: 549 WTNSISSVSS--NGWLSKWSSQPAQQDE 626
W +S S + NGWL KW ++P Q+E
Sbjct: 635 WISSQRSYAEALNGWLRKWLTEPEVQEE 662
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,842,775
Number of Sequences: 37544
Number of extensions: 561480
Number of successful extensions: 1453
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3596576368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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