Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_F23
(1176 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL034393-13|CAA22317.1| 340|Caenorhabditis elegans Hypothetical... 108 9e-24
AF045639-5|AAC02569.2| 937|Caenorhabditis elegans Osmotic avoid... 33 0.30
AF031408-1|AAB87064.1| 937|Caenorhabditis elegans olfactory cha... 33 0.30
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p... 32 0.90
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein. 32 0.90
Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical pr... 31 2.1
AF016672-8|AAB66117.4| 998|Caenorhabditis elegans Jnk interacti... 31 2.1
U55375-4|AAC69042.3| 287|Caenorhabditis elegans Lim domain fami... 30 2.8
U64856-6|AAB04989.1| 406|Caenorhabditis elegans Hypothetical pr... 30 3.6
U64856-5|AAT81185.1| 301|Caenorhabditis elegans Hypothetical pr... 30 3.6
Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical pr... 29 4.8
AF039717-3|AAK82917.1| 530|Caenorhabditis elegans Abnormal daue... 29 4.8
AF020344-1|AAB84392.1| 530|Caenorhabditis elegans fork head-rel... 29 4.8
Z75714-7|CAB00064.2| 270|Caenorhabditis elegans Hypothetical pr... 29 6.4
U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body prot... 29 6.4
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot... 29 6.4
U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body prot... 29 6.4
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele... 29 6.4
AL034488-1|CAA22455.1| 625|Caenorhabditis elegans Hypothetical ... 29 6.4
AL117206-9|CAL22706.1| 292|Caenorhabditis elegans Hypothetical ... 29 8.4
AL034488-6|CAA22450.2| 467|Caenorhabditis elegans Hypothetical ... 29 8.4
>AL034393-13|CAA22317.1| 340|Caenorhabditis elegans Hypothetical
protein Y18D10A.17 protein.
Length = 340
Score = 108 bits (259), Expect = 9e-24
Identities = 59/116 (50%), Positives = 74/116 (63%), Gaps = 6/116 (5%)
Frame = +1
Query: 199 MSSGMPELGSKISLISKADIRYEGRLFTVDPQECTIALASVRSFGTEDRETQYPVAPQSQ 378
MS+ P +GSKISLISK DIRYEG L+TVD + TIALA VRSFGTE R T PVA +
Sbjct: 1 MSNQTPYIGSKISLISKLDIRYEGILYTVDTNDSTIALAKVRSFGTEKRPTANPVAARDD 60
Query: 379 VYDYILFRGSDIKDI------RVLNNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVG 528
VY+YI+F+ SDIKD+ ++ N +P DPAI+ +S + AP G
Sbjct: 61 VYEYIIFKASDIKDLIVCDTPKMANIGGGLPYDPAIISVSSRSAPASDGAPAASAG 116
>AF045639-5|AAC02569.2| 937|Caenorhabditis elegans Osmotic
avoidance abnormal protein9 protein.
Length = 937
Score = 33.5 bits (73), Expect = 0.30
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +1
Query: 655 SQQNASRSGTPAVGVHRKSPTADQSIQV 738
SQ++ S + TP +G+HR +P AD I+V
Sbjct: 841 SQEDRSEASTPNLGIHRTTPKADSPIRV 868
>AF031408-1|AAB87064.1| 937|Caenorhabditis elegans olfactory
channel protein.
Length = 937
Score = 33.5 bits (73), Expect = 0.30
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +1
Query: 655 SQQNASRSGTPAVGVHRKSPTADQSIQV 738
SQ++ S + TP +G+HR +P AD I+V
Sbjct: 841 SQEDRSEASTPNLGIHRTTPKADSPIRV 868
>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
protein 40 protein.
Length = 1415
Score = 31.9 bits (69), Expect = 0.90
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +3
Query: 441 SFNAQ*SCHYADVCTPNSGYW---TSSWAVCGAV*PSSCWTNSISSVSSNGWLSKWS 602
+FN Q + Y+ N + T +WA + P++ + ++ +V+SNG LS WS
Sbjct: 876 AFNTQYTVRYSTAVDGNQHRYVNSTETWATVEGLRPATEYEFAVRAVASNGQLSTWS 932
>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
Length = 1415
Score = 31.9 bits (69), Expect = 0.90
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +3
Query: 441 SFNAQ*SCHYADVCTPNSGYW---TSSWAVCGAV*PSSCWTNSISSVSSNGWLSKWS 602
+FN Q + Y+ N + T +WA + P++ + ++ +V+SNG LS WS
Sbjct: 876 AFNTQYTVRYSTAVDGNQHRYVNSTETWATVEGLRPATEYEFAVRAVASNGQLSTWS 932
>Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical
protein K08E3.4 protein.
Length = 643
Score = 30.7 bits (66), Expect = 2.1
Identities = 20/73 (27%), Positives = 31/73 (42%)
Frame = +1
Query: 442 PSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVHNQLNK 621
P+ P A + PP PAP Y Q++ P V ++ P P++ PS +Q +
Sbjct: 470 PAPPTFLAPTPVIAPPPPEPTPAPSHYASQYDAPPVHESFEPAVPPVSA-PSHYASQYDA 528
Query: 622 TSSMLDLIGGGSQ 660
+D SQ
Sbjct: 529 PPEPIDSHSSSSQ 541
>AF016672-8|AAB66117.4| 998|Caenorhabditis elegans Jnk interacting
protein (scaffoldprotein) protein 1 protein.
Length = 998
Score = 30.7 bits (66), Expect = 2.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 454 NDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQY 573
NDP++ +P +LG+ P+P + PV GQ PQY
Sbjct: 264 NDPSVCSYRLPSSLGSAPSPSP--PRPLSPVFGQPAPPQY 301
>U55375-4|AAC69042.3| 287|Caenorhabditis elegans Lim domain family
protein 6 protein.
Length = 287
Score = 30.3 bits (65), Expect = 2.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 64 CXRCACCQLPVSHFVVCSDLFG 129
C RC+CCQL +S F C G
Sbjct: 43 CLRCSCCQLSLSSFKKCFSRHG 64
>U64856-6|AAB04989.1| 406|Caenorhabditis elegans Hypothetical
protein T25F10.6a protein.
Length = 406
Score = 29.9 bits (64), Expect = 3.6
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +1
Query: 478 SVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVH--NQLNKTSSMLDLIGG 651
+ PP P PG+ F + Q + +G PS +H +L ++ ++ I
Sbjct: 49 AAPPASLKSPTPGRQQVNFTPSIPQSVLRKQQNYSSGKPSTIHTKEKLMRSEGIIP-IQA 107
Query: 652 GSQQNASRSGTPAVGVHR 705
GS + AS+ G GV R
Sbjct: 108 GSNKYASQKGMTGFGVPR 125
>U64856-5|AAT81185.1| 301|Caenorhabditis elegans Hypothetical
protein T25F10.6b protein.
Length = 301
Score = 29.9 bits (64), Expect = 3.6
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +1
Query: 478 SVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVH--NQLNKTSSMLDLIGG 651
+ PP P PG+ F + Q + +G PS +H +L ++ ++ I
Sbjct: 49 AAPPASLKSPTPGRQQVNFTPSIPQSVLRKQQNYSSGKPSTIHTKEKLMRSEGIIP-IQA 107
Query: 652 GSQQNASRSGTPAVGVHR 705
GS + AS+ G GV R
Sbjct: 108 GSNKYASQKGMTGFGVPR 125
>Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical
protein R07B5.9 protein.
Length = 657
Score = 29.5 bits (63), Expect = 4.8
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = +1
Query: 427 VLNNVPSMP--NDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSG 600
++N P P + P Q + P G+G P +H Q+ PMAG P+
Sbjct: 387 MINTTPQQPPFSHPNSQQQATP---GSGGVPSCGPAYTHHTPEQQSQQFMSPPMAGMPAS 443
Query: 601 V-HNQLNKTSSMLDLIGG 651
V N S+ ++++GG
Sbjct: 444 VASNHSIHNSNSIEMVGG 461
>AF039717-3|AAK82917.1| 530|Caenorhabditis elegans Abnormal dauer
formation protein16, isoform a protein.
Length = 530
Score = 29.5 bits (63), Expect = 4.8
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Frame = +1
Query: 511 PGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVHNQLNKT------SSMLDLIGGGSQQN-- 666
P ++ Q N+P P+ Q M P + N LN T SS+ IGGG+Q +
Sbjct: 35 PHHHLNQHNNPYHPMHPHHQLPHMQQLPQPLLN-LNMTTLTSSGSSVASSIGGGAQCSPC 93
Query: 667 ASRSGTPAVGVHRKSPTADQSI 732
AS S T A ++ T Q +
Sbjct: 94 ASGSSTAATNSSQQQQTVGQML 115
>AF020344-1|AAB84392.1| 530|Caenorhabditis elegans fork
head-related transcriptionfactor DAF-16b protein.
Length = 530
Score = 29.5 bits (63), Expect = 4.8
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Frame = +1
Query: 511 PGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVHNQLNKT------SSMLDLIGGGSQQN-- 666
P ++ Q N+P P+ Q M P + N LN T SS+ IGGG+Q +
Sbjct: 35 PHHHLNQHNNPYHPMHPHHQLPHMQQLPQPLLN-LNMTTLTSSGSSVASSIGGGAQCSPC 93
Query: 667 ASRSGTPAVGVHRKSPTADQSI 732
AS S T A ++ T Q +
Sbjct: 94 ASGSSTAATNSSQQQQTVGQML 115
>Z75714-7|CAB00064.2| 270|Caenorhabditis elegans Hypothetical
protein ZC434.4 protein.
Length = 270
Score = 29.1 bits (62), Expect = 6.4
Identities = 11/40 (27%), Positives = 26/40 (65%)
Frame = +2
Query: 68 NAALVANFPSVILLFVLIYSVDRFSVFEIVENLCHRNRSS 187
N+ +V+N P+ + V++ +D+F+ FE+ E+ R+ ++
Sbjct: 55 NSIIVSNIPAFVGEGVVLAIIDQFASFEVEESFVQRSNTA 94
>U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body protein
1, isoform b protein.
Length = 369
Score = 29.1 bits (62), Expect = 6.4
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +1
Query: 427 VLNNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQT-PYPQ--YHPMAGFPS 597
+ ++P+ P P +++S PP P P +Y + + P PQ + PM
Sbjct: 140 IREDIPAPPRPPPPVELSPPPR---PPPPPEYDEEEETRAFWERYPLPQASHQPMLAAAH 196
Query: 598 GVHNQLNKTSS 630
+HN+L + SS
Sbjct: 197 NLHNELKQWSS 207
>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
1, isoform a protein.
Length = 1010
Score = 29.1 bits (62), Expect = 6.4
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +1
Query: 427 VLNNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQT-PYPQ--YHPMAGFPS 597
+ ++P+ P P +++S PP P P +Y + + P PQ + PM
Sbjct: 781 IREDIPAPPRPPPPVELSPPPR---PPPPPEYDEEEETRAFWERYPLPQASHQPMLAAAH 837
Query: 598 GVHNQLNKTSS 630
+HN+L + SS
Sbjct: 838 NLHNELKQWSS 848
>U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body protein
1, isoform c protein.
Length = 999
Score = 29.1 bits (62), Expect = 6.4
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +1
Query: 427 VLNNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQT-PYPQ--YHPMAGFPS 597
+ ++P+ P P +++S PP P P +Y + + P PQ + PM
Sbjct: 781 IREDIPAPPRPPPPVELSPPPR---PPPPPEYDEEEETRAFWERYPLPQASHQPMLAAAH 837
Query: 598 GVHNQLNKTSS 630
+HN+L + SS
Sbjct: 838 NLHNELKQWSS 848
>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein (
C.elegans vinculin (deb-1) gene, complete cds. ).
Length = 1010
Score = 29.1 bits (62), Expect = 6.4
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +1
Query: 427 VLNNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQT-PYPQ--YHPMAGFPS 597
+ ++P+ P P +++S PP P P +Y + + P PQ + PM
Sbjct: 781 IREDIPAPPRPPPPVELSPPPR---PPPPPEYDEEEETRAFWERYPLPQASHQPMLAAAH 837
Query: 598 GVHNQLNKTSS 630
+HN+L + SS
Sbjct: 838 NLHNELKQWSS 848
>AL034488-1|CAA22455.1| 625|Caenorhabditis elegans Hypothetical
protein Y54G11A.1 protein.
Length = 625
Score = 29.1 bits (62), Expect = 6.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 572 IIQWLAFQVEFTTSSTRRAQCLTSLVEDPNKMHL 673
+I + F + T ST CL S +EDP+++HL
Sbjct: 11 LILIITFLIFTDTVSTSSDPCLDSQIEDPSQLHL 44
>AL117206-9|CAL22706.1| 292|Caenorhabditis elegans Hypothetical
protein Y67A10A.11 protein.
Length = 292
Score = 28.7 bits (61), Expect = 8.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 465 HYADVCTPNSGYWTSSWAVCGAV*PSSCWTNSISSVSSN 581
+Y C P+ GYWT +W+ V + W S + +S +
Sbjct: 111 NYTLACCPDGGYWT-TWSGYSKVSNQAAWQRSRTCLSGS 148
>AL034488-6|CAA22450.2| 467|Caenorhabditis elegans Hypothetical
protein Y54G11A.7 protein.
Length = 467
Score = 28.7 bits (61), Expect = 8.4
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 538 HPVVGQTPYPQYHPMAG-FPSGVHNQLNKTSSMLDLIGGGS 657
H + Y +Y G F + N+ NKT+S+LD++ S
Sbjct: 257 HTALFHIEYAEYESALGIFDREIANRFNKTNSLLDMVDASS 297
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,486,624
Number of Sequences: 27780
Number of extensions: 462884
Number of successful extensions: 1298
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3213813064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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