Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_F23
         (1176 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.060
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    26   0.56 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   3.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   5.2  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   9.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   9.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   9.1  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    22   9.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 0.060
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
 Frame = +1

Query: 460 PAIMQMSVPPTLGT-GPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVHNQLNKTSSML 636
           P I Q S  P+ G  GP P  +      P  G  P P   P  G P G     N +  M+
Sbjct: 7   PIITQQSQQPSSGAPGPQPSPHQSP-QAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMI 65

Query: 637 DLIGG 651
               G
Sbjct: 66  SPASG 70



 Score = 23.0 bits (47), Expect = 5.2
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +1

Query: 442 PSMPNDPAIMQMSVPPTLGTGPAPG 516
           PS    P   Q   PP    GP PG
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPG 49


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 26.2 bits (55), Expect = 0.56
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +2

Query: 449 CPMILPLCRCLYPQ---LWVLDQLLGSMWGSLTIQLLD 553
           CP+IL  C+C+Y Q   L +  +L G +   + +   D
Sbjct: 176 CPLILGSCKCIYVQSINLCMAGRLFGYLCPGMALSQFD 213


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -3

Query: 748 RLYQPECFGQLLDFSYEHRQQVYLTEMHFVGILHQ*GQALSSS---C*AGCELHLESQPL 578
           R+++P+ +      SY H     +T  +    L+Q G+ L SS     AGC ++LE+ P+
Sbjct: 84  RIWKPDTYFYNGKHSYLHT----ITSPNKFVRLYQDGRVLYSSRLTIKAGCPMNLENFPM 139

Query: 577 D 575
           D
Sbjct: 140 D 140


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 5.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 117 RTNNKMTDGKLATSAAXTNSQCCPNP 40
           RT +K +   +  S   T+SQ CP P
Sbjct: 360 RTPSKCSQTSVHYSNGQTHSQLCPTP 385


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 674 GQVHLLSVFIGKVQQLTKAFRLVQALAA 757
           G +HLL     + Q++ +AF+ VQ L +
Sbjct: 145 GALHLLFRHFSQRQEVLQAFKQVQLLVS 172


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 476 CLYPQLW--VLDQLLGSMWGSLTIQLLDKLHI 565
           C   + W  ++  ++G+     T+ LLDK+HI
Sbjct: 303 CFLFRAWESIIVGMIGAFITCFTMPLLDKMHI 334


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 261 LRRPTFYCRSSGMYY 305
           + +PTF C+  G +Y
Sbjct: 227 IEQPTFLCKGDGKWY 241


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 674 GQVHLLSVFIGKVQQLTKAFRLVQALAA 757
           G +HLL     + Q++ +AF+ VQ L +
Sbjct: 113 GALHLLFRHFSQRQEVLQAFKQVQLLVS 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,890
Number of Sequences: 438
Number of extensions: 5959
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40006332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)